Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s5.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15106.99 113243.93
2. krt4 ENSDARG00000017624, ENSDARG00000115790 12802.53 95969.40 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 4608.91 34548.98 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2816.56 21113.29 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. actc1b ENSDARG00000099197 2560.51 19193.91 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
6. apobb apobb 2560.51 19193.91
7. mt-co2 ENSDARG00000063908 2560.51 19193.91 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mt-atp6 ENSDARG00000063911 2304.46 17274.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2304.46 17274.53 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. mt-co3 ENSDARG00000063912 2048.41 15355.14 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. mt-nd4 ENSDARG00000063917 2048.41 15355.14 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. apoa1b ENSDARG00000101324 1792.35 13435.68 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
13. apoa1a ENSDARG00000012076, ENSDARG00000110395 1280.25 9596.92 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
14. mt-nd2 ENSDARG00000063899 1280.25 9596.92 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1280.25 9596.92 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. mylz3 ENSDARG00000017441 1280.25 9596.92 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
17. actb2 ENSDARG00000037870 1024.20 7677.53 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. apoa2 ENSDARG00000015866 1024.20 7677.53 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
19. cplx2l ENSDARG00000018997 1024.20 7677.53 complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
20. eif5a ENSDARG00000017235 1024.20 7677.53 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
21. tnni2a.4 ENSDARG00000029069 1024.20 7677.53 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. BX511252.1 BX511252.1 768.15 5758.15
23. atp2a1 ENSDARG00000020574 768.15 5758.15 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
24. eef1a1l1 ENSDARG00000020850 768.15 5758.15 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. mt-co1 ENSDARG00000063905 768.15 5758.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
26. si:dkey-151g10.6 si:dkey-151g10.6 768.15 5758.15
27. KRTCAP2 ENSDARG00000070386 512.10 3838.77 keratinocyte associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-060825-91]
28. RPL37A RPL37A 512.10 3838.77
29. acot7 ENSDARG00000018653 512.10 3838.77 acyl-CoA thioesterase 7 [Source:ZFIN;Acc:ZDB-GENE-040912-42]
30. acta1b ENSDARG00000055618 512.10 3838.77 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
31. agr2 ENSDARG00000070480 512.10 3838.77 anterior gradient 2 [Source:ZFIN;Acc:ZDB-GENE-050417-214]
32. aldob ENSDARG00000053684 512.10 3838.77 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
33. apoa4 apoa4 512.10 3838.77
34. apoc1l apoc1l 512.10 3838.77
35. apoeb ENSDARG00000040295 512.10 3838.77 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
36. atp5g1 512.10 3838.77 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
37. ccng1 ENSDARG00000076667, ENSDARG00000110260 512.10 3838.77 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
38. cfl2 ENSDARG00000014106 512.10 3838.77 cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
39. col1a1b ENSDARG00000035809 512.10 3838.77 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
40. cox4i1 ENSDARG00000032970 512.10 3838.77 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
41. dao.1 ENSDARG00000035602 512.10 3838.77 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
42. gm2a ENSDARG00000088439 512.10 3838.77 GM2 ganglioside activator [Source:ZFIN;Acc:ZDB-GENE-050417-373]
43. hsd11b3a hsd11b3a 512.10 3838.77
44. hspa9 ENSDARG00000003035, ENSDARG00000114629 512.10 3838.77 heat shock protein 9 [Source:ZFIN;Acc:ZDB-GENE-030828-12]
45. mid1ip1a ENSDARG00000041051 512.10 3838.77 MID1 interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-990415-81]
46. msna ENSDARG00000058128, ENSDARG00000114614 512.10 3838.77 moesin a [Source:ZFIN;Acc:ZDB-GENE-021211-2]
47. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 512.10 3838.77 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
48. nrip1a ENSDARG00000068965 512.10 3838.77 nuclear receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040723-8]
49. pfn1 ENSDARG00000088091 512.10 3838.77 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
50. rnaseka ENSDARG00000069461 512.10 3838.77 ribonuclease, RNase K a [Source:ZFIN;Acc:ZDB-GENE-060825-301]
51. rpl11 ENSDARG00000043509 512.10 3838.77 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
52. rplp2l ENSDARG00000011201 512.10 3838.77 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
53. rps23 ENSDARG00000021838 512.10 3838.77 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. rps27.1 ENSDARG00000023298 512.10 3838.77 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
55. rps7 ENSDARG00000042566 512.10 3838.77 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
56. serpinb1l4 ENSDARG00000096888 512.10 3838.77 serpin peptidase inhibitor, clade B (ovalbumin), member 1, like 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7169]
57. tmsb4x ENSDARG00000077777 512.10 3838.77 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
58. tnnc2 ENSDARG00000070835, ENSDARG00000111155 512.10 3838.77 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
59. vdac2 ENSDARG00000013623 512.10 3838.77 voltage-dependent anion channel 2 [Source:ZFIN;Acc:ZDB-GENE-030131-845]
60. zgc:161979 zgc:161979 512.10 3838.77
61. BX571712.1 ENSDARG00000097833 256.05 1919.38
62. CABZ01076275.1 ENSDARG00000100753 256.05 1919.38 scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
63. CABZ01080590.2 CABZ01080590.2 256.05 1919.38
64. COL4A3BP COL4A3BP 256.05 1919.38
65. COX5B_1 ENSDARG00000015978 256.05 1919.38 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
66. CR354540.2 ENSDARG00000117517 256.05 1919.38
67. CR936437.1 CR936437.1 256.05 1919.38
68. ELOVL4 ELOVL4 256.05 1919.38
69. MYADM ENSDARG00000086815 256.05 1919.38 myeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]
70. RSBN1 RSBN1 256.05 1919.38
71. SCARNA6 SCARNA6 256.05 1919.38
72. TMEM216 ENSDARG00000091576 256.05 1919.38 transmembrane protein 216 [Source:HGNC Symbol;Acc:HGNC:25018]
73. UBC ENSDARG00000102632 256.05 1919.38 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
74. USMG5 USMG5 256.05 1919.38
75. WDR83OS ENSDARG00000025554 256.05 1919.38 WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
76. aco1 ENSDARG00000026376 256.05 1919.38 aconitase 1, soluble [Source:ZFIN;Acc:ZDB-GENE-031118-76]
77. acta1a ENSDARG00000036371 256.05 1919.38 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
78. ahcy ENSDARG00000005191 256.05 1919.38 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
79. ak1 ENSDARG00000001950 256.05 1919.38 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
80. ak3 ENSDARG00000058226 256.05 1919.38 adenylate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2142]
81. aldh8a1 ENSDARG00000036776, ENSDARG00000115119 256.05 1919.38 aldehyde dehydrogenase 8 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040912-3]
82. ank1 ank1 256.05 1919.38
83. anks1b ENSDARG00000003512 256.05 1919.38 ankyrin repeat and sterile alpha motif domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-041210-349]
84. anxa1a ENSDARG00000026726 256.05 1919.38 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
85. ap2m1a ENSDARG00000002790 256.05 1919.38 adaptor related protein complex 2 subunit mu 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9784]
86. arf4a ENSDARG00000045989, ENSDARG00000103858 256.05 1919.38 ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
87. arid3b ENSDARG00000104034 256.05 1919.38 AT rich interactive domain 3B (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-070209-182]
88. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 256.05 1919.38 ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
89. atp5g3b 256.05 1919.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
90. boc ENSDARG00000074335 256.05 1919.38 BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
91. bri3 ENSDARG00000086332 256.05 1919.38 brain protein I3 [Source:ZFIN;Acc:ZDB-GENE-030131-3038]
92. bzw1a ENSDARG00000010481 256.05 1919.38 basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
93. c9 ENSDARG00000016319 256.05 1919.38 complement component 9 [Source:ZFIN;Acc:ZDB-GENE-050522-442]
94. calm2b 256.05 1919.38 calmodulin 2b, (phosphorylase kinase, delta)
95. capns1b ENSDARG00000013804 256.05 1919.38 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
96. cd81 cd81 256.05 1919.38
97. cdk1 ENSDARG00000087554, ENSDARG00000110840 256.05 1919.38 cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
98. cecr1a 256.05 1919.38 cat eye syndrome chromosome region, candidate 1a
99. cenpf ENSDARG00000055133 256.05 1919.38 centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
100. chd4b ENSDARG00000025789 256.05 1919.38 chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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