Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s25.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22591.83 169344.36
2. krt4 ENSDARG00000017624, ENSDARG00000115790 9097.44 68192.80 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 3180.64 23841.51
4. tmsb4x ENSDARG00000077777 3035.37 22752.60 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. apoa2 ENSDARG00000015866 2226.66 16690.65 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. actb2 ENSDARG00000037870 1981.66 14854.17 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. apobb apobb 1970.82 14772.92
8. apoa1b ENSDARG00000101324 1730.16 12968.97 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
9. apoeb ENSDARG00000040295 1337.73 10027.39 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
10. zgc:161979_1 zgc:161979_1 1019.02 7638.39
11. actb1 ENSDARG00000037746, ENSDARG00000113649 975.65 7313.30 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
12. apoa1a ENSDARG00000012076, ENSDARG00000110395 721.98 5411.83 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
13. mt-co2 ENSDARG00000063908 672.12 5038.09 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. eef1a1l1 ENSDARG00000020850 646.10 4843.05 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. mt-nd2 ENSDARG00000063899 624.42 4680.54 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-nd4 ENSDARG00000063917 576.72 4322.99 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. mt-atp6 ENSDARG00000063911 537.69 4030.43 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. mt-co3 ENSDARG00000063912 526.85 3949.17 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. cyt1l ENSDARG00000036832 520.35 3900.45 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
20. bhmt ENSDARG00000013430 492.16 3689.14 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
21. zgc:161979 zgc:161979 483.49 3624.16
22. apoa4 apoa4 457.47 3429.11
23. mt-cyb ENSDARG00000063924 424.95 3185.35 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. ctsla ENSDARG00000007836 416.28 3120.36 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
25. cfl1l ENSDARG00000012972 398.93 2990.31 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
26. ppiaa ENSDARG00000009212 385.93 2892.86 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. zgc:92533 zgc:92533 375.09 2811.61
28. zgc:153129 zgc:153129 359.91 2697.82
29. col1a1a ENSDARG00000012405, ENSDARG00000116113 357.74 2681.56 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
30. ckmb ENSDARG00000040565 338.23 2535.31 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 336.06 2519.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. mt-nd1 ENSDARG00000063895 325.22 2437.79 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. hmga1a ENSDARG00000028335 297.03 2226.48 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
34. si:dkey-151g10.6 si:dkey-151g10.6 294.86 2210.22
35. apoc2 ENSDARG00000092155 292.70 2194.03 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
36. col1a1b ENSDARG00000035809 286.19 2145.23 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
37. mt-co1 ENSDARG00000063905 271.02 2031.52 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
38. tpma ENSDARG00000033683 266.68 1998.99 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
39. pfn1 ENSDARG00000088091 264.51 1982.72 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
40. sepp1a 264.51 1982.72 selenoprotein P, plasma, 1a
41. pabpc1a ENSDARG00000017219 260.17 1950.19 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
42. ckma ENSDARG00000035327, ENSDARG00000114671 253.67 1901.47 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
43. fn1b ENSDARG00000006526 253.67 1901.47 fibronectin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6545]
44. zgc:113413 zgc:113413 251.50 1885.20
45. APOB APOB 249.33 1868.93
46. hspa8 ENSDARG00000068992, ENSDARG00000114726 249.33 1868.93 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
47. icn ENSDARG00000009978 249.33 1868.93 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
48. rbp4 ENSDARG00000101199 247.17 1852.74 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
49. slc43a2b ENSDARG00000061120, ENSDARG00000117188 245.00 1836.48 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
50. zgc:112425 zgc:112425 245.00 1836.48
51. paics ENSDARG00000033539 223.32 1673.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
52. ahcy ENSDARG00000005191 210.31 1576.45 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
53. atp2a1 ENSDARG00000020574 205.97 1543.91 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
54. myl12.1 ENSDARG00000099766 205.97 1543.91 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
55. tfa ENSDARG00000016771 205.97 1543.91 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 203.80 1527.65 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. tpm3 ENSDARG00000005162 199.47 1495.19 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
58. APOA4 APOA4 197.30 1478.93
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 197.30 1478.93 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. rpl18a ENSDARG00000025073 186.46 1397.67 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
61. pla2g12b ENSDARG00000015662 184.29 1381.41 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
62. rplp1 ENSDARG00000021864 184.29 1381.41 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
63. ldhba ENSDARG00000019644 182.12 1365.14 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
64. btf3 ENSDARG00000035400, ENSDARG00000116462 179.95 1348.87 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
65. hdlbp hdlbp 179.95 1348.87
66. ptmab ENSDARG00000101766 175.62 1316.42 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
67. rpl10a ENSDARG00000042905, ENSDARG00000115649 169.11 1267.62 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
68. actc1b ENSDARG00000099197 166.95 1251.43 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
69. rpl26 ENSDARG00000102317 166.95 1251.43 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 164.78 1235.16 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. zgc:66286 zgc:66286 162.61 1218.90
72. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 160.44 1202.63 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
73. rps23 ENSDARG00000021838 160.44 1202.63 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
74. rpl23 ENSDARG00000053457 158.27 1186.36 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
75. krt8 ENSDARG00000058358, ENSDARG00000109279 156.10 1170.10 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
76. rps14 ENSDARG00000036629 153.94 1153.91 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. rps26l ENSDARG00000030408 153.94 1153.91 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
78. rpl8 ENSDARG00000014867 151.77 1137.64 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
79. si:ch211-105c13.3 ENSDARG00000089441 149.60 1121.38 si:ch211-105c13.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4483]
80. ywhabl ENSDARG00000040287 149.60 1121.38 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
81. cotl1 ENSDARG00000026829 147.43 1105.11 coactosin-like F-actin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8325]
82. dao.1 ENSDARG00000035602 147.43 1105.11 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
83. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 147.43 1105.11 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
84. prps1a ENSDARG00000015524 145.26 1088.84 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
85. pvalb2 ENSDARG00000002768, ENSDARG00000114085 143.10 1072.65 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
86. rplp2 ENSDARG00000101406 143.10 1072.65 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
87. pvalb9 ENSDARG00000071601, ENSDARG00000113946 140.93 1056.39 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
88. rpl19 ENSDARG00000013307 140.93 1056.39 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
89. ATP5B 138.76 1040.12 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
90. gapdh ENSDARG00000043457 136.59 1023.85 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
91. gatm ENSDARG00000036239 136.59 1023.85 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
92. rpsa ENSDARG00000019181 136.59 1023.85 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
93. ywhaqb ENSDARG00000023323 136.59 1023.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide b [Source:ZFIN;Acc:ZDB-GENE-030131-7135]
94. ctsd ENSDARG00000057698, ENSDARG00000110172, ENSDARG00000113876 134.42 1007.59 cathepsin D [Source:ZFIN;Acc:ZDB-GENE-010131-8]
95. fetub ENSDARG00000053973 134.42 1007.59 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
96. gamt ENSDARG00000070844, ENSDARG00000109945 134.42 1007.59 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
97. col1a2 ENSDARG00000020007 132.26 991.40 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
98. col5a1 ENSDARG00000012593 132.26 991.40 procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
99. myh9a ENSDARG00000063295 132.26 991.40 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
100. aldob ENSDARG00000053684 130.09 975.13 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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