Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s24.

Sample reads: 133,415. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13805.92 103480.92
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5949.23 44591.87 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2467.40 18494.15 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoc1l apoc1l 2465.80 18482.16
5. apoa2 ENSDARG00000015866 2129.52 15961.61 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. actb2 ENSDARG00000037870 1811.61 13578.74 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. apobb apobb 1729.33 12962.02
8. mt-co2 ENSDARG00000063908 1654.25 12399.27 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. apoa1b ENSDARG00000101324 1493.70 11195.88 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
10. tpma ENSDARG00000033683 1377.08 10321.77 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
11. mt-atp6 ENSDARG00000063911 1230.90 9226.09 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. ckma ENSDARG00000035327, ENSDARG00000114671 1187.77 8902.81 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. apoeb ENSDARG00000040295 1099.11 8238.27 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
14. ckmb ENSDARG00000040565 1088.72 8160.39 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
15. mt-co3 ENSDARG00000063912 1008.85 7561.74 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. mt-nd2 ENSDARG00000063899 988.88 7412.05 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
17. mt-nd4 ENSDARG00000063917 977.69 7328.18 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 837.11 6274.48 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. eef1a1l1 ENSDARG00000020850 831.52 6232.58 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. atp2a1 ENSDARG00000020574 814.74 6106.80 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. pvalb2 ENSDARG00000002768, ENSDARG00000114085 724.48 5430.27 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
22. mt-cyb ENSDARG00000063924 720.49 5400.36 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. actc1b ENSDARG00000099197 668.57 5011.20 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
24. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 648.60 4861.52 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
25. mylz3 ENSDARG00000017441 638.22 4783.72 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
26. zgc:161979_1 zgc:161979_1 630.23 4723.83
27. apoa1a ENSDARG00000012076, ENSDARG00000110395 609.46 4568.15 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
28. mt-nd1 ENSDARG00000063895 602.27 4514.26 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. tnnc2 ENSDARG00000070835, ENSDARG00000111155 461.69 3460.55 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
30. zgc:66286 zgc:66286 439.32 3292.88
31. ppiaa ENSDARG00000009212 428.14 3209.08 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. acta1b ENSDARG00000055618 424.95 3185.17 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
33. mt-co1 ENSDARG00000063905 420.15 3149.19 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
34. zgc:92533 zgc:92533 412.16 3089.30
35. zgc:161979 zgc:161979 396.19 2969.60
36. si:dkey-151g10.6 si:dkey-151g10.6 381.81 2861.82
37. ctsla ENSDARG00000007836 368.23 2760.03 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
38. bhmt ENSDARG00000013430 358.65 2688.23 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
39. apoa4 apoa4 356.25 2670.24
40. eef2b ENSDARG00000100371, ENSDARG00000109247 356.25 2670.24 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. pfn1 ENSDARG00000088091 341.87 2562.45 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 340.28 2550.54 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. myhz1.3 ENSDARG00000067997 338.68 2538.54 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
44. tpm3 ENSDARG00000005162 334.68 2508.56 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
45. col1a1b ENSDARG00000035809 328.29 2460.67 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
46. myl10 ENSDARG00000062592 323.50 2424.76 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
47. rpl23 ENSDARG00000053457 317.91 2382.86 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
48. cyt1l ENSDARG00000036832 313.92 2352.96 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
49. col1a1a ENSDARG00000012405, ENSDARG00000116113 304.33 2281.08 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
50. cfl1l ENSDARG00000012972 284.36 2131.39 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
51. tnni2a.4 ENSDARG00000029069 282.76 2119.40 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
52. zgc:112425 zgc:112425 272.38 2041.60
53. apoc2 ENSDARG00000092155 269.19 2017.69 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
54. hspa8 ENSDARG00000068992, ENSDARG00000114726 269.19 2017.69 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
55. rplp1 ENSDARG00000021864 261.20 1957.80 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. si:ch211-226o13.2 259.60 1945.81 si:ch211-226o13.2
57. atp1b1a ENSDARG00000013144 253.21 1897.91 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
58. gapdh ENSDARG00000043457 250.81 1879.92 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
59. ATP5B 249.22 1868.00 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
60. APOB APOB 248.42 1862.01
61. rps23 ENSDARG00000021838 248.42 1862.01 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. btf3 ENSDARG00000035400, ENSDARG00000116462 245.22 1838.02 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
63. rps26l ENSDARG00000030408 245.22 1838.02 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. rps27a ENSDARG00000032725, ENSDARG00000114059 244.42 1832.03 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. pvalb4 ENSDARG00000024433 243.62 1826.03 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
66. hmga1a ENSDARG00000028335 242.03 1814.11 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
67. rpl8 ENSDARG00000014867 241.23 1808.12 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
68. rpl18a ENSDARG00000025073 235.64 1766.22 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
69. zgc:153129 zgc:153129 234.84 1760.22
70. tnnt3b ENSDARG00000068457 234.04 1754.22 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
71. icn ENSDARG00000009978 224.45 1682.34 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
72. rpl19 ENSDARG00000013307 220.46 1652.44 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. rpl21 ENSDARG00000010516, ENSDARG00000110263 220.46 1652.44 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
74. rps20 ENSDARG00000036044 218.86 1640.44 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
75. pabpc1a ENSDARG00000017219 218.06 1634.45 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
76. atp5g1 216.47 1622.53 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
77. krt8 ENSDARG00000058358, ENSDARG00000109279 215.67 1616.53 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
78. rpl36a ENSDARG00000058105, ENSDARG00000112656 213.27 1598.54 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
79. pvalb1 ENSDARG00000037789 209.28 1568.64 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
80. tnnt3a ENSDARG00000030270 207.68 1556.65 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
81. sepp1a 206.08 1544.65 selenoprotein P, plasma, 1a
82. rbp4 ENSDARG00000101199 205.28 1538.66 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
83. rps2 ENSDARG00000077291 203.69 1526.74 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. acta1a ENSDARG00000036371 202.89 1520.74 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
85. rpl9 ENSDARG00000037350, ENSDARG00000112384 202.89 1520.74 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
86. paics ENSDARG00000033539 201.29 1508.75 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
87. fn1b ENSDARG00000006526 198.09 1484.76 fibronectin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6545]
88. aldoab ENSDARG00000034470 197.30 1478.84 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
89. rpl26 ENSDARG00000102317 197.30 1478.84 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
90. myl12.1 ENSDARG00000099766 196.50 1472.85 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
91. ahcy ENSDARG00000005191 194.90 1460.85 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
92. atp5g3b 190.11 1424.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. rpl27 ENSDARG00000015128 190.11 1424.95 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
94. zgc:113413 zgc:113413 190.11 1424.95
95. pla2g12b ENSDARG00000015662 189.31 1418.95 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
96. rpl18 ENSDARG00000029533 189.31 1418.95 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
97. APOA4 APOA4 187.71 1406.96
98. rps9 ENSDARG00000011405, ENSDARG00000113248 186.91 1400.97 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
99. myl1 ENSDARG00000014196 178.13 1335.16 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
100. rplp2 ENSDARG00000101406 171.74 1287.26 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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