Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s22.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22503.08 168671.91
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3222.03 24150.74 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3012.93 22583.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2248.43 16853.11 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 2073.26 15540.13 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. atp2a1 ENSDARG00000020574 1684.93 12629.40 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1622.15 12158.83 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. actc1b ENSDARG00000099197 1473.30 11043.13 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mylz3 ENSDARG00000017441 1423.69 10671.27 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1386.22 10390.42 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. tmsb4x ENSDARG00000077777 1278.38 9582.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. actb2 ENSDARG00000037870 1230.79 9225.39 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. apoc1l apoc1l 1225.73 9187.46
14. mt-atp6 ENSDARG00000063911 1088.02 8155.26 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. mt-nd2 ENSDARG00000063899 1068.27 8007.22 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-co2 ENSDARG00000063908 1056.63 7919.97 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. acta1b ENSDARG00000055618 1020.68 7650.51 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. tnnc2 ENSDARG00000070835, ENSDARG00000111155 926.51 6944.66 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
19. mt-co3 ENSDARG00000063912 917.90 6880.12 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. eef1a1l1 ENSDARG00000020850 894.61 6705.55 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. apoa2 ENSDARG00000015866 887.02 6648.66 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
22. mt-nd4 ENSDARG00000063917 877.91 6580.38 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
23. mt-cyb ENSDARG00000063924 703.24 5271.14 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. myhz1.3 ENSDARG00000067997 703.24 5271.14 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. apobb apobb 687.04 5149.71
26. apoa1b ENSDARG00000101324 649.06 4865.03 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. pvalb1 ENSDARG00000037789 634.89 4758.82 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
28. tnni2a.4 ENSDARG00000029069 609.07 4565.29 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
29. mt-nd1 ENSDARG00000063895 552.87 4144.04 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. tnnt3a ENSDARG00000030270 536.67 4022.61 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
31. actb1 ENSDARG00000037746, ENSDARG00000113649 532.62 3992.26 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
32. tnnt3b ENSDARG00000068457 489.58 3669.65 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
33. apoeb ENSDARG00000040295 463.26 3472.37 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
34. si:ch211-226o13.2 449.08 3366.08 si:ch211-226o13.2
35. myl1 ENSDARG00000014196 411.61 3085.22 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. ppiaa ENSDARG00000009212 408.07 3058.69 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
37. si:dkey-151g10.6 si:dkey-151g10.6 390.86 2929.69
38. mylpfb ENSDARG00000002589 380.73 2853.76 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
39. mt-co1 ENSDARG00000063905 368.07 2758.87 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 341.75 2561.59 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. acta1a ENSDARG00000036371 333.14 2497.05 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
42. col1a1a ENSDARG00000012405, ENSDARG00000116113 330.61 2478.09 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
43. zgc:66286 zgc:66286 329.09 2466.70
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 327.57 2455.30 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. rpl23 ENSDARG00000053457 319.98 2398.41 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. apoa1a ENSDARG00000012076, ENSDARG00000110395 309.34 2318.66 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
47. hspa8 ENSDARG00000068992, ENSDARG00000114726 284.03 2128.95 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
48. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 277.95 2083.38 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
49. col1a1b ENSDARG00000035809 276.43 2071.98 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
50. zgc:92533 zgc:92533 271.37 2034.05
51. ttna ttna 270.87 2030.31
52. ATP5B 270.36 2026.48 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
53. rpl8 ENSDARG00000014867 267.32 2003.70 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
54. atp1b1a ENSDARG00000013144 263.78 1977.16 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
55. btf3 ENSDARG00000035400, ENSDARG00000116462 263.27 1973.34 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
56. aldoab ENSDARG00000034470 257.70 1931.59 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
57. tpm3 ENSDARG00000005162 255.17 1912.63 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
58. nme2b.2 ENSDARG00000099420 251.63 1886.09 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
59. zgc:161979_1 zgc:161979_1 250.11 1874.70
60. gapdh ENSDARG00000043457 233.40 1749.45 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
61. rplp1 ENSDARG00000021864 233.40 1749.45 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. rps27a ENSDARG00000032725, ENSDARG00000114059 233.40 1749.45 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. rpl21 ENSDARG00000010516, ENSDARG00000110263 229.35 1719.09 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
64. zgc:112425 zgc:112425 227.83 1707.70
65. rps2 ENSDARG00000077291 221.76 1662.20 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
66. myl10 ENSDARG00000062592 215.68 1616.63 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
67. hmga1a ENSDARG00000028335 211.12 1582.45 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
68. ttnb ttnb 208.59 1563.49
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 207.07 1552.09 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 203.02 1521.74 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. rpl18a ENSDARG00000025073 202.52 1517.99 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
72. rps23 ENSDARG00000021838 199.98 1498.95 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
73. rpl26 ENSDARG00000102317 195.93 1468.59 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
74. rpl27 ENSDARG00000015128 190.87 1430.67 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
75. rpl19 ENSDARG00000013307 190.37 1426.92 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
76. cyt1l ENSDARG00000036832 181.25 1358.56 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
77. zgc:161979 zgc:161979 180.24 1350.99
78. rpl11 ENSDARG00000043509 174.67 1309.24 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
79. aldoaa ENSDARG00000011665 172.64 1294.02 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
80. bhmt ENSDARG00000013430 172.64 1294.02 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
81. atp5g1 172.14 1290.28 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
82. eif5a ENSDARG00000017235 172.14 1290.28 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
83. rps26l ENSDARG00000030408 172.14 1290.28 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
84. atp5g3b 171.63 1286.45 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
85. rpl5b ENSDARG00000015862, ENSDARG00000109661 162.52 1218.17 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
86. rplp0 ENSDARG00000051783 162.01 1214.35 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. atp5a1 157.46 1180.24 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
88. ctsla ENSDARG00000007836 156.44 1172.60 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
89. pfn1 ENSDARG00000088091 155.94 1168.85 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
90. pkmb ENSDARG00000099860 154.42 1157.46 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
91. rps9 ENSDARG00000011405, ENSDARG00000113248 153.41 1149.89 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
92. hsp90ab1 ENSDARG00000029150 152.39 1142.24 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
93. COX5B_1 ENSDARG00000015978 151.89 1138.49 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
94. ahcy ENSDARG00000005191 151.89 1138.49 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
95. rplp2 ENSDARG00000101406 148.85 1115.71 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
96. rps6 ENSDARG00000019778 148.34 1111.88 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
97. zgc:153129 zgc:153129 147.33 1104.31
98. pvalb4 ENSDARG00000024433 146.82 1100.49 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
99. rps15 ENSDARG00000070849, ENSDARG00000110979 146.82 1100.49 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
100. rps14 ENSDARG00000036629 143.79 1077.78 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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