Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_trunk1, section s18.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22121.99 165819.93
2. tpma ENSDARG00000033683 4733.49 35480.85 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3436.89 25761.92 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 2777.26 20817.52 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2674.70 20048.76 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2196.44 16463.87 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
7. ckma ENSDARG00000035327, ENSDARG00000114671 2134.36 15998.53 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mt-co2 ENSDARG00000063908 1880.66 14096.87 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mylz3 ENSDARG00000017441 1802.38 13510.11 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mt-atp6 ENSDARG00000063911 1785.11 13380.66 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. mt-nd4 ENSDARG00000063917 1614.00 12098.07 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. mt-nd2 ENSDARG00000063899 1508.73 11309.00 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1484.44 11126.93 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. atp2a1 ENSDARG00000020574 1415.35 10609.05 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. acta1b ENSDARG00000055618 1332.76 9989.98 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
16. mt-co3 ENSDARG00000063912 1313.87 9848.38 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-cyb ENSDARG00000063924 1142.75 8565.72 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
18. actc1b ENSDARG00000099197 972.18 7287.18 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
19. myhz1.3 ENSDARG00000067997 919.82 6894.70 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
20. pvalb1 ENSDARG00000037789 904.70 6781.36 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. mt-nd1 ENSDARG00000063895 866.92 6498.18 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. tnni2a.4 ENSDARG00000029069 774.61 5806.25 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. tnnt3b ENSDARG00000068457 772.99 5794.11 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
24. tmsb4x ENSDARG00000077777 772.45 5790.06 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
25. tnnt3a ENSDARG00000030270 768.13 5757.68 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. actb2 ENSDARG00000037870 692.02 5187.18 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
27. eef1a1l1 ENSDARG00000020850 660.17 4948.44 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. si:ch211-226o13.2 621.85 4661.20 si:ch211-226o13.2
29. acta1a ENSDARG00000036371 611.59 4584.30 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
30. mylpfb ENSDARG00000002589 609.97 4572.16 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
31. si:dkey-151g10.6 si:dkey-151g10.6 554.37 4155.39
32. zgc:66286 zgc:66286 554.37 4155.39
33. myl10 ENSDARG00000062592 507.41 3803.40 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
34. col2a1a ENSDARG00000069093, ENSDARG00000111202 455.59 3414.97 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
35. nme2b.2 ENSDARG00000099420 447.49 3354.25 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
36. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 437.78 3281.47 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
37. ttna ttna 432.38 3240.99
38. aldoab ENSDARG00000034470 430.22 3224.80 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. myl1 ENSDARG00000014196 426.44 3196.47 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
40. tpm3 ENSDARG00000005162 415.10 3111.47 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
41. rpl23 ENSDARG00000053457 398.91 2990.11 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. actb1 ENSDARG00000037746, ENSDARG00000113649 395.67 2965.83 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. ppiaa ENSDARG00000009212 380.02 2848.52 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. ttnb ttnb 379.48 2844.47
45. mt-co1 ENSDARG00000063905 357.89 2682.64 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. gapdh ENSDARG00000043457 357.35 2678.59 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 344.39 2581.45 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. rplp1 ENSDARG00000021864 320.64 2403.42 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 316.32 2371.04 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. zgc:92533 zgc:92533 303.91 2278.02
51. rps27a ENSDARG00000032725, ENSDARG00000114059 294.73 2209.21 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
52. rps23 ENSDARG00000021838 289.33 2168.73 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
53. pvalb4 ENSDARG00000024433 286.63 2148.49 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
54. myhz2 ENSDARG00000012944 286.09 2144.45 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
55. rpl8 ENSDARG00000014867 281.23 2108.02 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. rpl18a ENSDARG00000025073 275.84 2067.62 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
57. smyhc1 ENSDARG00000099959, ENSDARG00000115916 269.36 2019.04 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
58. hspa8 ENSDARG00000068992, ENSDARG00000114726 267.20 2002.85 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
59. col1a1a ENSDARG00000012405, ENSDARG00000116113 261.80 1962.38 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 252.63 1893.64 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. col9a1 col9a1 246.69 1849.12
62. col11a1a ENSDARG00000026165, ENSDARG00000115341 242.37 1816.73 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
63. rpl26 ENSDARG00000102317 242.37 1816.73 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. mt-nd3 ENSDARG00000063914 236.43 1772.21 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
65. rpl21 ENSDARG00000010516, ENSDARG00000110263 234.81 1760.07 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
66. rps26l ENSDARG00000030408 234.81 1760.07 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
67. pkmb ENSDARG00000099860 233.73 1751.97 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
68. col1a1b ENSDARG00000035809 231.57 1735.78 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
69. fabp3 ENSDARG00000023290 229.41 1719.59 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
70. rps2 ENSDARG00000077291 225.64 1691.33 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
71. eef2b ENSDARG00000100371, ENSDARG00000109247 214.30 1606.33 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
72. atp5g3b 208.90 1565.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
73. aldoaa ENSDARG00000011665 208.36 1561.81 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
74. rpl27 ENSDARG00000015128 207.82 1557.76 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
75. atp5g1 207.28 1553.71 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
76. rps14 ENSDARG00000036629 204.04 1529.42 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. rpl11 ENSDARG00000043509 202.96 1521.33 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
78. rpl9 ENSDARG00000037350, ENSDARG00000112384 202.96 1521.33 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 200.80 1505.14 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. rpl18 ENSDARG00000029533 199.19 1493.07 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
81. rpl19 ENSDARG00000013307 193.25 1448.55 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 191.63 1436.40 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. tmem38a ENSDARG00000024047 190.55 1428.31 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
84. ldb3b ENSDARG00000099974 188.39 1412.12 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
85. rps20 ENSDARG00000036044 187.31 1404.02 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. rplp2 ENSDARG00000101406 185.69 1391.88 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
87. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 183.53 1375.69 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
88. krt18 ENSDARG00000018404, ENSDARG00000109528 182.99 1371.64 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
89. myhz1.2 ENSDARG00000067995 181.37 1359.50 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
90. rplp2l ENSDARG00000011201 181.37 1359.50 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
91. rps27.1 ENSDARG00000023298 180.29 1351.40 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
92. rpl36 ENSDARG00000100588 175.97 1319.02 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
93. ATP5B 174.89 1310.92 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
94. rps6 ENSDARG00000019778 170.58 1278.62 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
95. eif5a ENSDARG00000017235 170.04 1274.57 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
96. rpsa ENSDARG00000019181 170.04 1274.57 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
97. tpm2 ENSDARG00000104682 170.04 1274.57 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
98. cyt1l ENSDARG00000036832 166.26 1246.24 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
99. rpl7 ENSDARG00000007320 165.18 1238.14 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
100. CR354540.2 ENSDARG00000117517 162.48 1217.90
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA