Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s17.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20964.36 157160.05
2. tpma ENSDARG00000033683 5100.18 38233.68 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 4104.53 30769.75 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 2644.18 19822.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2595.59 19457.93 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2427.73 18199.56 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2418.01 18126.70 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
8. mylz3 ENSDARG00000017441 2190.08 16418.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. atp2a1 ENSDARG00000020574 1794.29 13450.96 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-atp6 ENSDARG00000063911 1523.96 11424.42 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1522.19 11411.15 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mt-nd2 ENSDARG00000063899 1437.38 10775.37 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-co3 ENSDARG00000063912 1436.50 10768.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-co2 ENSDARG00000063908 1413.53 10596.58 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. mt-nd4 ENSDARG00000063917 1410.88 10576.71 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. acta1b ENSDARG00000055618 1371.12 10278.65 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. myhz1.3 ENSDARG00000067997 1161.74 8709.02 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
18. pvalb1 ENSDARG00000037789 1130.82 8477.23 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
19. tnnt3a ENSDARG00000030270 1014.20 7602.99 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
20. actc1b ENSDARG00000099197 1003.60 7523.52 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
21. mt-cyb ENSDARG00000063924 977.10 7324.86 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. tnni2a.4 ENSDARG00000029069 971.80 7285.13 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. acta1a ENSDARG00000036371 874.62 6556.62 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
24. mt-nd1 ENSDARG00000063895 803.06 6020.17 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. tnnt3b ENSDARG00000068457 773.02 5794.97 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
26. si:dkey-151g10.6 si:dkey-151g10.6 670.54 5026.73
27. tmsb4x ENSDARG00000077777 654.64 4907.53 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
28. si:ch211-226o13.2 640.50 4801.53 si:ch211-226o13.2
29. mylpfb ENSDARG00000002589 607.82 4556.54 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
30. eef1a1l1 ENSDARG00000020850 605.17 4536.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 579.55 4344.62 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
32. actb2 ENSDARG00000037870 560.11 4198.88 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
33. myl1 ENSDARG00000014196 530.96 3980.36 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. ttna ttna 510.64 3828.03
35. col2a1a ENSDARG00000069093, ENSDARG00000111202 485.02 3635.97 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
36. zgc:66286 zgc:66286 462.05 3463.77
37. aldoab ENSDARG00000034470 442.61 3318.04 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
38. ttnb ttnb 430.24 3225.31
39. rpl23 ENSDARG00000053457 424.06 3178.98 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. mt-co1 ENSDARG00000063905 416.99 3125.98 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. myl10 ENSDARG00000062592 381.65 2861.05 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. nme2b.2 ENSDARG00000099420 379.89 2847.86 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
43. rpl10a ENSDARG00000042905, ENSDARG00000115649 371.93 2788.19 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
44. rps27a ENSDARG00000032725, ENSDARG00000114059 368.40 2761.72 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
45. tpm3 ENSDARG00000005162 363.10 2721.99 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
46. gapdh ENSDARG00000043457 360.45 2702.13 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
47. myhz2 ENSDARG00000012944 356.03 2668.99 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
48. actb1 ENSDARG00000037746, ENSDARG00000113649 333.95 2503.47 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 332.18 2490.20 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. rpl18a ENSDARG00000025073 325.11 2437.20 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. rplp1 ENSDARG00000021864 321.58 2410.74 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. ppiaa ENSDARG00000009212 320.69 2404.06 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
53. rpl8 ENSDARG00000014867 302.14 2265.00 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
54. col1a1a ENSDARG00000012405, ENSDARG00000116113 292.42 2192.14 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
55. hbae3 ENSDARG00000079305 290.66 2178.94 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
56. col11a1a ENSDARG00000026165, ENSDARG00000115341 288.01 2159.08 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
57. col9a1 col9a1 277.40 2079.54
58. rps23 ENSDARG00000021838 273.87 2053.08 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. pvalb4 ENSDARG00000024433 267.69 2006.75 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 267.69 2006.75 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. rpl26 ENSDARG00000102317 262.39 1967.02 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. rpl36a ENSDARG00000058105, ENSDARG00000112656 255.32 1914.02 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
63. rpl19 ENSDARG00000013307 250.90 1880.88 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
64. col1a1b ENSDARG00000035809 246.48 1847.75 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
65. rpl9 ENSDARG00000037350, ENSDARG00000112384 245.60 1841.15 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
66. mt-nd3 ENSDARG00000063914 243.83 1827.88 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
67. hspa8 ENSDARG00000068992, ENSDARG00000114726 242.07 1814.69 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
68. rpl27 ENSDARG00000015128 239.42 1794.82 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
69. hbbe3 ENSDARG00000038147, ENSDARG00000109344 232.35 1741.82 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
70. rps26l ENSDARG00000030408 231.46 1735.15 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
71. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 221.75 1662.36 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
72. rps9 ENSDARG00000011405, ENSDARG00000113248 220.86 1655.68 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
73. zgc:92533 zgc:92533 219.98 1649.09
74. pkmb ENSDARG00000099860 219.10 1642.49 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
75. rpl11 ENSDARG00000043509 210.26 1576.22 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. rpl36 ENSDARG00000100588 208.50 1563.03 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
77. rpl18 ENSDARG00000029533 206.73 1549.76 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. atp5g3b 205.84 1543.09 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
79. eef2b ENSDARG00000100371, ENSDARG00000109247 204.08 1529.89 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
80. ldb3b ENSDARG00000099974 203.19 1523.22 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
81. myhz1.2 ENSDARG00000067995 201.43 1510.03 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
82. rps14 ENSDARG00000036629 200.54 1503.36 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
83. smyhc1 ENSDARG00000099959, ENSDARG00000115916 199.66 1496.76 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
84. tmem38a ENSDARG00000024047 198.78 1490.16 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
85. krt18 ENSDARG00000018404, ENSDARG00000109528 196.13 1470.30 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
86. rplp2 ENSDARG00000101406 195.24 1463.62 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
87. rps20 ENSDARG00000036044 195.24 1463.62 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
88. ATP5B 193.48 1450.43 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
89. aldoaa ENSDARG00000011665 191.71 1437.16 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
90. CR354540.2 ENSDARG00000117517 189.06 1417.29
91. rps2 ENSDARG00000077291 186.41 1397.43 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
92. rpl7 ENSDARG00000007320 176.69 1324.56 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
93. col9a2 ENSDARG00000024492 174.92 1311.29 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
94. fabp3 ENSDARG00000023290 173.16 1298.10 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
95. rpl6 ENSDARG00000058451 172.27 1291.43 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. rps15 ENSDARG00000070849, ENSDARG00000110979 171.39 1284.83 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
97. rps27.1 ENSDARG00000023298 170.51 1278.23 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. slc25a4 ENSDARG00000027355, ENSDARG00000112318 170.51 1278.23 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
99. rps24 ENSDARG00000039347 169.62 1271.56 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
100. rpl35 ENSDARG00000018334 160.79 1205.37 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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