Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s16.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20975.49 157227.74
2. tpma ENSDARG00000033683 5264.25 39459.68 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3363.48 25211.92 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2805.31 21028.00 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2646.06 19834.29 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2417.65 18122.18 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. krt4 ENSDARG00000017624, ENSDARG00000115790 2234.81 16751.65 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
8. mylz3 ENSDARG00000017441 2229.99 16715.52 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. atp2a1 ENSDARG00000020574 2049.83 15365.08 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-atp6 ENSDARG00000063911 1603.19 12017.17 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1596.22 11964.92 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. acta1b ENSDARG00000055618 1595.68 11960.87 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
13. mt-co2 ENSDARG00000063908 1552.25 11635.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. mt-nd2 ENSDARG00000063899 1487.91 11153.05 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-nd4 ENSDARG00000063917 1391.93 10433.61 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. actc1b ENSDARG00000099197 1278.80 9585.61 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
17. pvalb1 ENSDARG00000037789 1264.32 9477.07 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
18. mt-co3 ENSDARG00000063912 1221.96 9159.55 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mt-cyb ENSDARG00000063924 1045.02 7833.24 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
20. myhz1.3 ENSDARG00000067997 1027.33 7700.64 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. tnni2a.4 ENSDARG00000029069 1026.79 7696.60 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. tnnt3b ENSDARG00000068457 890.60 6675.75 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
23. col2a1a ENSDARG00000069093, ENSDARG00000111202 812.32 6088.98 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
24. tnnt3a ENSDARG00000030270 787.12 5900.08 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. si:ch211-226o13.2 771.57 5783.52 si:ch211-226o13.2
26. mt-nd1 ENSDARG00000063895 769.96 5771.45 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. acta1a ENSDARG00000036371 679.88 5096.23 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. eef1a1l1 ENSDARG00000020850 670.77 5027.95 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. mylpfb ENSDARG00000002589 601.60 4509.46 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
30. si:dkey-151g10.6 si:dkey-151g10.6 575.86 4316.52
31. actb2 ENSDARG00000037870 575.32 4312.47 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
32. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 546.37 4095.47 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
33. myl1 ENSDARG00000014196 534.04 4003.05 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. tmsb4x ENSDARG00000077777 483.64 3625.26 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
35. ttna ttna 457.90 3432.32
36. col9a1 col9a1 449.86 3372.05
37. zgc:66286 zgc:66286 448.79 3364.03
38. aldoab ENSDARG00000034470 447.18 3351.96 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. myl10 ENSDARG00000062592 394.63 2958.06 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
40. rpl23 ENSDARG00000053457 374.26 2805.37 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
41. nme2b.2 ENSDARG00000099420 373.18 2797.28 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
42. col1a1a ENSDARG00000012405, ENSDARG00000116113 358.17 2684.76 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
43. col11a1a ENSDARG00000026165, ENSDARG00000115341 353.88 2652.61 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
44. ttnb ttnb 351.74 2636.57
45. gapdh ENSDARG00000043457 335.65 2515.96 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
46. mt-co1 ENSDARG00000063905 328.14 2459.67 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
47. tpm3 ENSDARG00000005162 325.46 2439.58 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
48. rpl10a ENSDARG00000042905, ENSDARG00000115649 313.67 2351.20 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
49. actb1 ENSDARG00000037746, ENSDARG00000113649 308.31 2311.03 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
50. ppiaa ENSDARG00000009212 296.51 2222.57 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 293.83 2202.49 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. myhz2 ENSDARG00000012944 291.68 2186.37 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
53. rpl8 ENSDARG00000014867 290.61 2178.35 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
54. col1a1b ENSDARG00000035809 289.54 2170.33 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
55. pvalb4 ENSDARG00000024433 277.74 2081.88 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
56. rplp1 ENSDARG00000021864 270.77 2029.63 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. col9a2 ENSDARG00000024492 268.63 2013.59 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
58. rpl26 ENSDARG00000102317 266.48 1997.48 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 263.80 1977.39 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. rpl18a ENSDARG00000025073 261.66 1961.35 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 257.37 1929.19 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. pkmb ENSDARG00000099860 254.15 1905.05 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 243.96 1828.67 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. smyhc1 ENSDARG00000099959, ENSDARG00000115916 239.67 1796.51 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
65. zgc:92533 zgc:92533 238.07 1784.52
66. eef2b ENSDARG00000100371, ENSDARG00000109247 234.31 1756.34 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
67. krt18 ENSDARG00000018404, ENSDARG00000109528 232.17 1740.30 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
68. fabp3 ENSDARG00000023290 230.02 1724.18 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
69. tmem38a ENSDARG00000024047 226.27 1696.07 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
70. rpl27 ENSDARG00000015128 220.37 1651.85 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. rps23 ENSDARG00000021838 219.30 1643.83 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. hspa8 ENSDARG00000068992, ENSDARG00000114726 218.23 1635.80 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
73. slc25a4 ENSDARG00000027355, ENSDARG00000112318 215.55 1615.72 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
74. aldoaa ENSDARG00000011665 209.65 1571.49 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
75. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 207.50 1555.38 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
76. ldb3b ENSDARG00000099974 206.43 1547.35 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
77. myhz1.2 ENSDARG00000067995 206.43 1547.35 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
78. rps26l ENSDARG00000030408 206.43 1547.35 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
79. ATP5B 204.29 1531.31 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
80. mt-nd3 ENSDARG00000063914 202.14 1515.20 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
81. rpl11 ENSDARG00000043509 201.07 1507.18 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
82. rps20 ENSDARG00000036044 200.53 1503.13 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
83. rpl9 ENSDARG00000037350, ENSDARG00000112384 194.63 1458.90 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
84. atp5g3b 191.42 1434.84 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
85. rpl36 ENSDARG00000100588 188.20 1410.71 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. rps9 ENSDARG00000011405, ENSDARG00000113248 185.52 1390.62 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
87. rps14 ENSDARG00000036629 184.98 1386.57 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
88. rps2 ENSDARG00000077291 184.45 1382.60 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. rps15 ENSDARG00000070849, ENSDARG00000110979 182.30 1366.48 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
90. casq2 ENSDARG00000008982 178.55 1338.37 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
91. actn3a ENSDARG00000013755, ENSDARG00000111128 177.48 1330.35 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
92. rpl18 ENSDARG00000029533 173.19 1298.19 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 171.04 1282.08 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rplp2 ENSDARG00000101406 167.83 1258.02 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
95. atp5g1 160.85 1205.70 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
96. rpl19 ENSDARG00000013307 159.78 1197.68 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
97. ak1 ENSDARG00000001950 159.25 1193.70 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
98. ccng1 ENSDARG00000076667, ENSDARG00000110260 158.71 1189.66 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
99. rpl7 ENSDARG00000007320 158.71 1189.66 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
100. rplp0 ENSDARG00000051783 158.17 1185.61 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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