Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s15.

Sample reads: 133,397. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27779.55 208246.95
2. tpma ENSDARG00000033683 4331.61 32471.53 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3181.80 23852.08 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 2228.85 16708.38 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2109.01 15810.01 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mylz3 ENSDARG00000017441 2027.19 15196.65 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1993.02 14940.50 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1902.06 14258.63 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. mt-co2 ENSDARG00000063908 1670.07 12519.53 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. atp2a1 ENSDARG00000020574 1554.57 11653.70 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. mt-atp6 ENSDARG00000063911 1516.54 11368.61 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1433.28 10744.46 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mt-nd2 ENSDARG00000063899 1375.53 10311.54 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. mt-co3 ENSDARG00000063912 1311.51 9831.62 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. acta1b ENSDARG00000055618 1251.83 9384.23 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
16. pvalb1 ENSDARG00000037789 1104.08 8276.64 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
17. myhz1.3 ENSDARG00000067997 1037.66 7778.73 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
18. mt-nd4 ENSDARG00000063917 1018.41 7634.42 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. mt-cyb ENSDARG00000063924 949.58 7118.44 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
20. tnni2a.4 ENSDARG00000029069 945.25 7085.98 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. actc1b ENSDARG00000099197 853.33 6396.91 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
22. tnnt3a ENSDARG00000030270 786.43 5895.40 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. col2a1a ENSDARG00000069093, ENSDARG00000111202 785.46 5888.13 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
24. mt-nd1 ENSDARG00000063895 735.41 5512.94 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. tnnt3b ENSDARG00000068457 734.93 5509.34 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
26. si:ch211-226o13.2 643.97 4827.46 si:ch211-226o13.2
27. acta1a ENSDARG00000036371 625.20 4686.76 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. eef1a1l1 ENSDARG00000020850 530.86 3979.55 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. si:dkey-151g10.6 si:dkey-151g10.6 527.49 3954.28
30. ttna ttna 524.61 3932.69
31. tmsb4x ENSDARG00000077777 514.02 3853.31 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
32. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 496.21 3719.79 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
33. mylpfb ENSDARG00000002589 489.95 3672.87 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. ttnb ttnb 467.81 3506.90
35. zgc:66286 zgc:66286 450.01 3373.46
36. myl1 ENSDARG00000014196 448.08 3358.99 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
37. actb2 ENSDARG00000037870 442.31 3315.74 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
38. mt-co1 ENSDARG00000063905 429.79 3221.88 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
39. col9a1 col9a1 402.84 3019.85
40. tpm3 ENSDARG00000005162 393.69 2951.26 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
41. aldoab ENSDARG00000034470 388.88 2915.20 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
42. col11a1a ENSDARG00000026165, ENSDARG00000115341 370.11 2774.50 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
43. rpl23 ENSDARG00000053457 348.45 2612.12 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
44. myl10 ENSDARG00000062592 332.09 2489.48 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
45. nme2b.2 ENSDARG00000099420 323.43 2424.56 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
46. gapdh ENSDARG00000043457 317.65 2381.24 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
47. ppiaa ENSDARG00000009212 298.88 2240.53 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
48. actb1 ENSDARG00000037746, ENSDARG00000113649 292.62 2193.60 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
49. rpl10a ENSDARG00000042905, ENSDARG00000115649 283.48 2125.08 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 266.63 1998.77 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. col1a1a ENSDARG00000012405, ENSDARG00000116113 259.42 1944.72 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
52. smyhc1 ENSDARG00000099959, ENSDARG00000115916 259.42 1944.72 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 253.16 1897.79 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. zgc:92533 zgc:92533 251.71 1886.92
55. rplp1 ENSDARG00000021864 249.31 1868.93 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. col9a2 ENSDARG00000024492 246.90 1850.86 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 246.42 1847.27 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. rpl8 ENSDARG00000014867 245.94 1843.67 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 244.01 1829.20 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. myhz2 ENSDARG00000012944 239.20 1793.14 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
61. pvalb4 ENSDARG00000024433 231.50 1735.42 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
62. rpl26 ENSDARG00000102317 229.58 1721.03 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
63. rps23 ENSDARG00000021838 228.13 1710.16 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. krt18 ENSDARG00000018404, ENSDARG00000109528 224.76 1684.89 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
65. eef2b ENSDARG00000100371, ENSDARG00000109247 224.28 1681.30 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
66. epyc ENSDARG00000056950 223.80 1677.70 epiphycan [Source:ZFIN;Acc:ZDB-GENE-041008-9]
67. rps2 ENSDARG00000077291 220.91 1656.03 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
68. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 218.99 1641.64 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 218.51 1638.04 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 216.58 1623.57 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. rpl18a ENSDARG00000025073 215.14 1612.78 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
72. krt8 ENSDARG00000058358, ENSDARG00000109279 212.25 1591.11 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
73. pkmb ENSDARG00000099860 205.03 1536.99 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
74. rpl19 ENSDARG00000013307 203.10 1522.52 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
75. col1a1b ENSDARG00000035809 200.22 1500.93 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
76. rpl27 ENSDARG00000015128 194.92 1461.20 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
77. hmga1a ENSDARG00000028335 193.96 1454.00 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
78. rps26l ENSDARG00000030408 191.07 1432.34 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
79. mt-nd3 ENSDARG00000063914 189.15 1417.95 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
80. ldb3b ENSDARG00000099974 188.67 1414.35 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
81. myhz1.2 ENSDARG00000067995 188.18 1410.67 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
82. aldoaa ENSDARG00000011665 179.04 1342.16 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
83. fabp3 ENSDARG00000023290 176.63 1324.09 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
84. CR354540.2 ENSDARG00000117517 176.15 1320.49
85. ATP5B 172.78 1295.23 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
86. rplp2 ENSDARG00000101406 172.78 1295.23 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
87. rps15a ENSDARG00000010160 171.34 1284.44 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
88. rpl11 ENSDARG00000043509 165.08 1237.51 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. rpl6 ENSDARG00000058451 163.16 1223.11 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. atp5g3b 161.71 1212.24 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
91. rps20 ENSDARG00000036044 157.86 1183.38 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
92. rps15 ENSDARG00000070849, ENSDARG00000110979 156.42 1172.59 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
93. atp5g1 155.94 1168.99 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
94. slc25a4 ENSDARG00000027355, ENSDARG00000112318 154.49 1158.12 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
95. rps9 ENSDARG00000011405, ENSDARG00000113248 154.01 1154.52 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
96. ptmab ENSDARG00000101766 153.05 1147.33 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
97. rps14 ENSDARG00000036629 152.09 1140.13 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
98. rplp2l ENSDARG00000011201 148.72 1114.87 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
99. actn3a ENSDARG00000013755, ENSDARG00000111128 147.76 1107.67 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
100. rps27.1 ENSDARG00000023298 147.76 1107.67 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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