Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s13.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19020.85 142570.11
2. tpma ENSDARG00000033683 4793.49 35929.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3908.44 29295.57 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2493.96 18693.39 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2210.17 16566.25 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2178.29 16327.30 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylz3 ENSDARG00000017441 1942.09 14556.87 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. krt4 ENSDARG00000017624, ENSDARG00000115790 1811.87 13580.81 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1630.46 12221.06 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. atp2a1 ENSDARG00000020574 1603.07 12015.75 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. mt-co2 ENSDARG00000063908 1565.80 11736.40 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. mt-atp6 ENSDARG00000063911 1392.47 10437.21 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. acta1b ENSDARG00000055618 1278.86 9585.65 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. mt-nd4 ENSDARG00000063917 1264.05 9474.64 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. mt-nd2 ENSDARG00000063899 1244.29 9326.53 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-co3 ENSDARG00000063912 1127.99 8454.81 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. pvalb1 ENSDARG00000037789 921.43 6906.55 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
18. myhz1.3 ENSDARG00000067997 898.08 6731.53 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. tnni2a.4 ENSDARG00000029069 889.10 6664.22 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
20. mt-cyb ENSDARG00000063924 855.87 6415.14 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. tnnt3a ENSDARG00000030270 807.82 6054.99 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
22. actc1b ENSDARG00000099197 793.45 5947.28 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
23. tnnt3b ENSDARG00000068457 775.04 5809.28 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
24. mt-nd1 ENSDARG00000063895 709.93 5321.26 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. acta1a ENSDARG00000036371 638.98 4789.45 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
26. si:ch211-226o13.2 603.06 4520.21 si:ch211-226o13.2
27. mylpfb ENSDARG00000002589 596.32 4469.70 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
28. eef1a1l1 ENSDARG00000020850 593.63 4449.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. si:dkey-151g10.6 si:dkey-151g10.6 520.89 3904.31
30. ppiaa ENSDARG00000009212 501.58 3759.58 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 498.43 3735.96 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
32. actb2 ENSDARG00000037870 452.18 3389.30 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
33. mt-co1 ENSDARG00000063905 425.69 3190.74 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
34. tmsb4x ENSDARG00000077777 425.69 3190.74 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
35. aldoab ENSDARG00000034470 421.65 3160.46 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
36. nme2b.2 ENSDARG00000099420 420.30 3150.34 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
37. myl1 ENSDARG00000014196 403.24 3022.47 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
38. zgc:66286 zgc:66286 400.54 3002.23
39. rpl23 ENSDARG00000053457 395.15 2961.83 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. hmga1a ENSDARG00000028335 382.13 2864.24 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 377.64 2830.59 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. zgc:112425 zgc:112425 357.88 2682.48
43. ttna ttna 356.54 2672.43
44. btf3 ENSDARG00000035400, ENSDARG00000116462 333.64 2500.79 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rpl8 ENSDARG00000014867 330.49 2477.18 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. ptmab ENSDARG00000101766 329.15 2467.13 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
47. myl10 ENSDARG00000062592 328.70 2463.76 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 314.78 2359.42 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. actb1 ENSDARG00000037746, ENSDARG00000113649 313.88 2352.68 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
50. rplp1 ENSDARG00000021864 310.74 2329.14 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
51. tpm3 ENSDARG00000005162 308.04 2308.90 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
52. col2a1a ENSDARG00000069093, ENSDARG00000111202 306.24 2295.41 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 299.51 2244.97 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. ttnb ttnb 299.06 2241.59
55. fabp3 ENSDARG00000023290 291.43 2184.40 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. gapdh ENSDARG00000043457 287.83 2157.42 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
57. rps23 ENSDARG00000021838 287.83 2157.42 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
58. rpl18a ENSDARG00000025073 286.49 2147.38 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. hspa8 ENSDARG00000068992, ENSDARG00000114726 277.06 2076.69 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
60. rpl9 ENSDARG00000037350, ENSDARG00000112384 274.36 2056.46 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
61. rpl26 ENSDARG00000102317 272.57 2043.04 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. rpl36a ENSDARG00000058105, ENSDARG00000112656 268.53 2012.76 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
63. rpl27 ENSDARG00000015128 257.75 1931.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
64. rpl19 ENSDARG00000013307 237.99 1783.85 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. myhz1.2 ENSDARG00000067995 233.95 1753.56 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
66. aldoaa ENSDARG00000011665 224.52 1682.88 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
67. pvalb4 ENSDARG00000024433 222.72 1669.39 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
68. rps26l ENSDARG00000030408 222.72 1669.39 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
69. rps9 ENSDARG00000011405, ENSDARG00000113248 220.03 1649.23 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
70. rpl11 ENSDARG00000043509 214.19 1605.45 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. pkmb ENSDARG00000099860 212.84 1595.33 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
72. rplp2 ENSDARG00000101406 209.25 1568.43 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
73. rps20 ENSDARG00000036044 207.01 1551.64 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. id1 ENSDARG00000040764 200.72 1504.49 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
75. rpl36 ENSDARG00000100588 200.72 1504.49 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
76. rpl18 ENSDARG00000029533 199.37 1494.37 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
77. mt-nd3 ENSDARG00000063914 198.92 1491.00 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
78. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 195.33 1464.09 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
79. col9a1 col9a1 194.88 1460.72
80. AL954137.2 ENSDARG00000114408 193.09 1447.30
81. rps14 ENSDARG00000036629 189.94 1423.69 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 188.60 1413.64 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. rpl7 ENSDARG00000007320 185.00 1386.66 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
84. tmem38a ENSDARG00000024047 185.00 1386.66 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
85. hmgn2 ENSDARG00000099572 184.56 1383.36 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
86. rps2 ENSDARG00000077291 183.66 1376.62 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
87. col1a1a ENSDARG00000012405, ENSDARG00000116113 180.96 1356.38 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
88. atp5g3b 178.72 1339.59 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
89. rplp2l ENSDARG00000011201 178.72 1339.59 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
90. rps27.1 ENSDARG00000023298 178.72 1339.59 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. zgc:92533 zgc:92533 177.82 1332.84
92. myhz2 ENSDARG00000012944 176.47 1322.72 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
93. rps19 ENSDARG00000030602 175.57 1315.98 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. ldb3b ENSDARG00000099974 173.78 1302.56 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
95. rpsa ENSDARG00000019181 173.78 1302.56 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. eef2b ENSDARG00000100371, ENSDARG00000109247 172.88 1295.82 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
97. rps5 ENSDARG00000043453 168.39 1262.16 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
98. fkbp1aa ENSDARG00000022684 166.59 1248.67 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
99. col1a1b ENSDARG00000035809 165.70 1242.00 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
100. slc25a4 ENSDARG00000027355, ENSDARG00000112318 165.70 1242.00 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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