Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s12.

Sample reads: 133,397. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14389.64 107870.95
2. tpma ENSDARG00000033683 3801.37 28496.71 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 2983.01 22361.93 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2217.56 16623.79 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 2018.03 15128.02 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2000.30 14995.11 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylz3 ENSDARG00000017441 1810.35 13571.16 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1638.68 12284.25 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. atp2a1 ENSDARG00000020574 1486.44 11143.00 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-co2 ENSDARG00000063908 1411.30 10579.71 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1331.66 9982.70 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mt-nd2 ENSDARG00000063899 1190.67 8925.78 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. acta1b ENSDARG00000055618 1135.79 8514.37 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. mt-atp6 ENSDARG00000063911 1111.59 8332.96 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. mt-nd4 ENSDARG00000063917 1043.21 7820.35 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. mt-co3 ENSDARG00000063912 1035.05 7759.18 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. actc1b ENSDARG00000099197 990.30 7423.72 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. pvalb1 ENSDARG00000037789 906.16 6792.97 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
19. mt-cyb ENSDARG00000063924 819.20 6141.08 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
20. eef1a1l1 ENSDARG00000020850 800.91 6003.97 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. tnni2a.4 ENSDARG00000029069 789.93 5921.66 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. actb2 ENSDARG00000037870 783.74 5875.25 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. tnnt3b ENSDARG00000068457 707.76 5305.67 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
24. myhz1.3 ENSDARG00000067997 703.82 5276.14 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. si:dkey-151g10.6 si:dkey-151g10.6 670.90 5029.36
26. mt-nd1 ENSDARG00000063895 646.13 4843.67 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. si:ch211-226o13.2 611.24 4582.12 si:ch211-226o13.2
28. tnnt3a ENSDARG00000030270 597.45 4478.74 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
29. tmsb4x ENSDARG00000077777 543.13 4071.54 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
30. ppiaa ENSDARG00000009212 524.84 3934.43 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. hmga1a ENSDARG00000028335 507.11 3801.52 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 469.96 3523.02 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
33. mylpfb ENSDARG00000002589 462.37 3466.12 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. acta1a ENSDARG00000036371 440.98 3305.78 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
35. myl1 ENSDARG00000014196 439.01 3291.01 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. zgc:112425 zgc:112425 436.48 3272.04
37. rpl23 ENSDARG00000053457 426.63 3198.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. ptmab ENSDARG00000101766 376.82 2824.81 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 367.53 2755.16 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. nme2b.2 ENSDARG00000099420 363.87 2727.73 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
41. mt-co1 ENSDARG00000063905 362.18 2715.06 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
42. actb1 ENSDARG00000037746, ENSDARG00000113649 353.18 2647.59 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. zgc:66286 zgc:66286 322.78 2419.70
44. rpl8 ENSDARG00000014867 312.93 2345.86 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. eef2b ENSDARG00000100371, ENSDARG00000109247 311.81 2337.46 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
46. btf3 ENSDARG00000035400, ENSDARG00000116462 304.77 2284.69 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
47. rpl18a ENSDARG00000025073 294.36 2206.65 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 294.08 2204.55 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. hspa8 ENSDARG00000068992, ENSDARG00000114726 292.95 2196.08 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
50. rps23 ENSDARG00000021838 292.67 2193.98 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 292.39 2191.88 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. aldoab ENSDARG00000034470 287.33 2153.95 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
53. ttna ttna 285.07 2137.01
54. rplp1 ENSDARG00000021864 283.10 2122.24 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. gapdh ENSDARG00000043457 281.70 2111.74 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
56. rpl9 ENSDARG00000037350, ENSDARG00000112384 276.07 2069.54 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
57. id1 ENSDARG00000040764 260.87 1955.59 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
58. rpl36a ENSDARG00000058105, ENSDARG00000112656 259.75 1947.20 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
59. hmgn2 ENSDARG00000099572 256.93 1926.06 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
60. rpl26 ENSDARG00000102317 256.65 1923.96 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
61. fabp3 ENSDARG00000023290 254.12 1904.99 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
62. myl10 ENSDARG00000062592 249.33 1869.09 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
63. ttnb ttnb 244.55 1833.25
64. zgc:92533 zgc:92533 242.86 1820.58
65. tpm3 ENSDARG00000005162 237.52 1780.55 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
66. myhz1.2 ENSDARG00000067995 236.67 1774.18 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
67. AL954137.2 ENSDARG00000114408 228.79 1715.11
68. si:ch211-251b21.1 ENSDARG00000007275 223.44 1675.00 si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
69. col1a1a ENSDARG00000012405, ENSDARG00000116113 219.50 1645.47 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
70. aldoaa ENSDARG00000011665 218.94 1641.27 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
71. rpl27 ENSDARG00000015128 218.94 1641.27 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
72. rpl19 ENSDARG00000013307 216.13 1620.20 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. rps20 ENSDARG00000036044 204.87 1535.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. rpl36 ENSDARG00000100588 202.06 1514.73 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
75. rps2 ENSDARG00000077291 200.93 1506.26 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. rps26l ENSDARG00000030408 199.81 1497.86 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. rps12 ENSDARG00000036875, ENSDARG00000115157 196.99 1476.72 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
78. hsp90ab1 ENSDARG00000029150 196.43 1472.52 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
79. pkmb ENSDARG00000099860 196.43 1472.52 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
80. rps14 ENSDARG00000036629 195.30 1464.05 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 193.90 1453.56 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. rplp2 ENSDARG00000101406 191.93 1438.79 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
83. rplp0 ENSDARG00000051783 190.80 1430.32 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
84. col1a1b ENSDARG00000035809 187.42 1404.98 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
85. fkbp1aa ENSDARG00000022684 185.45 1390.21 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
86. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 182.92 1371.25 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
87. atp5g3b 181.51 1360.68 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
88. rpl11 ENSDARG00000043509 181.51 1360.68 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. rpl6 ENSDARG00000058451 181.23 1358.58 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. mt-nd3 ENSDARG00000063914 180.67 1354.38 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 180.39 1352.28 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. rps19 ENSDARG00000030602 179.26 1343.81 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
93. si:dkeyp-86f7.3 si:dkeyp-86f7.3 179.26 1343.81
94. pvalb4 ENSDARG00000024433 178.14 1335.41 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
95. rpsa ENSDARG00000019181 178.14 1335.41 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. rps27.1 ENSDARG00000023298 176.17 1320.65 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
97. gch2 ENSDARG00000099101 173.63 1301.61 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
98. zgc:123194 zgc:123194 171.95 1289.01
99. rplp2l ENSDARG00000011201 171.66 1286.84 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
100. ATP5B 168.85 1265.77 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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