Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s11.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25808.11 193473.13
2. tpma ENSDARG00000033683 3236.58 24263.35 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 2661.73 19953.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 2299.44 17237.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1826.24 13690.59 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1684.37 12627.05 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1579.48 11840.73 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
8. mylz3 ENSDARG00000017441 1401.57 10507.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. atp2a1 ENSDARG00000020574 1167.74 8754.08 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1142.32 8563.52 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. mt-nd4 ENSDARG00000063917 1070.24 8023.16 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. mt-co2 ENSDARG00000063908 1007.85 7555.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. acta1b ENSDARG00000055618 931.60 6983.83 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. mt-atp6 ENSDARG00000063911 926.98 6949.20 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. actc1b ENSDARG00000099197 891.40 6682.47 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. mt-nd2 ENSDARG00000063899 867.37 6502.33 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
17. mt-co3 ENSDARG00000063912 847.96 6356.82 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb2 ENSDARG00000037870 815.62 6114.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. eef1a1l1 ENSDARG00000020850 733.82 5501.16 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. pvalb1 ENSDARG00000037789 660.81 4953.83 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. mt-cyb ENSDARG00000063924 656.65 4922.64 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. tmsb4x ENSDARG00000077777 590.57 4427.27 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
23. tnni2a.4 ENSDARG00000029069 572.09 4288.73 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. tnnt3b ENSDARG00000068457 569.31 4267.89 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. tnnt3a ENSDARG00000030270 547.13 4101.62 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. si:dkey-151g10.6 si:dkey-151g10.6 522.64 3918.02
27. mt-nd1 ENSDARG00000063895 510.16 3824.47 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. si:ch211-226o13.2 459.79 3446.86 si:ch211-226o13.2
29. ppiaa ENSDARG00000009212 456.10 3419.20 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
30. actb1 ENSDARG00000037746, ENSDARG00000113649 442.23 3315.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
31. myhz1.3 ENSDARG00000067997 437.61 3280.59 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
32. myl1 ENSDARG00000014196 415.89 3117.76 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
33. mylpfb ENSDARG00000002589 400.65 3003.51 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 393.25 2948.04 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
35. mt-co1 ENSDARG00000063905 385.86 2892.64 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
36. hmga1a ENSDARG00000028335 363.68 2726.36 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. acta1a ENSDARG00000036371 360.90 2705.52 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
38. ptmab ENSDARG00000101766 358.59 2688.21 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
39. zgc:66286 zgc:66286 355.82 2667.44
40. rpl23 ENSDARG00000053457 352.12 2639.70 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
41. zgc:112425 zgc:112425 347.97 2608.59
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 344.73 2584.30 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. nme2b.2 ENSDARG00000099420 317.47 2379.95 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
44. gch2 ENSDARG00000099101 308.22 2310.60 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
45. rpl8 ENSDARG00000014867 304.07 2279.49 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. aldoab ENSDARG00000034470 303.14 2272.52 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
47. zgc:92533 zgc:92533 301.29 2258.65
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 296.67 2224.02 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. gapdh ENSDARG00000043457 287.89 2158.20 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
50. myl10 ENSDARG00000062592 279.11 2092.38 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. rplp1 ENSDARG00000021864 276.34 2071.61 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 275.41 2064.64 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. eef2b ENSDARG00000100371, ENSDARG00000109247 261.09 1957.29 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
54. tpm3 ENSDARG00000005162 258.32 1936.52 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 250.92 1881.05 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. ttna ttna 248.15 1860.28
57. col1a1a ENSDARG00000012405, ENSDARG00000116113 245.84 1842.96 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
58. rpl26 ENSDARG00000102317 245.38 1839.52 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 244.92 1836.07 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. si:ch211-251b21.1 ENSDARG00000007275 243.07 1822.20 si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 240.29 1801.36 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. id1 ENSDARG00000040764 239.83 1797.91 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
63. rps23 ENSDARG00000021838 234.75 1759.83 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. fabp3 ENSDARG00000023290 233.36 1749.41 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
65. rpl36a ENSDARG00000058105, ENSDARG00000112656 224.58 1683.59 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
66. rpl27 ENSDARG00000015128 221.81 1662.82 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
67. ttnb ttnb 215.80 1617.77
68. aldoaa ENSDARG00000011665 211.18 1583.13 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
69. rpl18a ENSDARG00000025073 207.95 1558.92 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. AL954137.2 ENSDARG00000114408 206.10 1545.05
71. pkmb ENSDARG00000099860 205.17 1538.08 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
72. cyt1l ENSDARG00000036832 204.25 1531.18 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
73. hmgn2 ENSDARG00000099572 199.17 1493.10 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
74. rps2 ENSDARG00000077291 197.32 1479.23 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
75. pvalb4 ENSDARG00000024433 196.39 1472.26 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
76. col1a1b ENSDARG00000035809 191.31 1434.17 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
77. myhz1.2 ENSDARG00000067995 190.85 1430.73 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
78. rpl19 ENSDARG00000013307 185.77 1392.64 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
79. rps26l ENSDARG00000030408 180.68 1354.49 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
80. rpl7 ENSDARG00000007320 179.76 1347.59 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
81. rps20 ENSDARG00000036044 177.45 1330.27 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
82. rps9 ENSDARG00000011405, ENSDARG00000113248 174.68 1309.51 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
83. hsp90ab1 ENSDARG00000029150 173.29 1299.09 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
84. rpl18 ENSDARG00000029533 172.83 1295.64 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. si:dkeyp-86f7.3 si:dkeyp-86f7.3 170.52 1278.32
86. rpl11 ENSDARG00000043509 167.74 1257.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
87. smyhc1 ENSDARG00000099959, ENSDARG00000115916 167.74 1257.48 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
88. rps12 ENSDARG00000036875, ENSDARG00000115157 165.90 1243.69 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
89. rps14 ENSDARG00000036629 165.43 1240.16 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
90. rpl36 ENSDARG00000100588 160.81 1205.53 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
91. rps27.1 ENSDARG00000023298 160.81 1205.53 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
92. rpsa ENSDARG00000019181 160.81 1205.53 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
93. fkbp1aa ENSDARG00000022684 160.35 1202.08 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
94. rplp2l ENSDARG00000011201 160.35 1202.08 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
95. atp5g3b 158.50 1188.21 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
96. rps15 ENSDARG00000070849, ENSDARG00000110979 157.12 1177.87 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
97. zgc:123194 zgc:123194 153.42 1150.13
98. rplp0 ENSDARG00000051783 152.96 1146.68 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
99. rps4x ENSDARG00000014690 151.11 1132.81 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
100. rps19 ENSDARG00000030602 150.18 1125.84 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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