Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s10.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21176.21 158753.24
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4119.26 30881.16 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2946.82 22091.64 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2317.08 17370.62 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1976.26 14815.57 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1524.27 11427.11 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1386.37 10393.30 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mt-co2 ENSDARG00000063908 1182.92 8868.08 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mylz3 ENSDARG00000017441 1137.31 8526.15 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. tmsb4x ENSDARG00000077777 1016.18 7618.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1001.50 7508.02 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mt-nd4 ENSDARG00000063917 968.99 7264.30 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. actb2 ENSDARG00000037870 898.73 6737.57 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. mt-nd2 ENSDARG00000063899 865.69 6489.88 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-co3 ENSDARG00000063912 841.05 6305.16 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. mt-atp6 ENSDARG00000063911 812.21 6088.95 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. acta1b ENSDARG00000055618 791.76 5935.64 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. atp2a1 ENSDARG00000020574 770.79 5778.44 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
19. eef1a1l1 ENSDARG00000020850 746.67 5597.62 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. actc1b ENSDARG00000099197 711.54 5334.25 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
21. tnni2a.4 ENSDARG00000029069 708.91 5314.54 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. mt-cyb ENSDARG00000063924 672.74 5043.38 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. pvalb1 ENSDARG00000037789 627.64 4705.27 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. actb1 ENSDARG00000037746, ENSDARG00000113649 567.34 4253.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
25. si:dkey-151g10.6 si:dkey-151g10.6 550.04 4123.52
26. tnnt3b ENSDARG00000068457 546.89 4099.91 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
27. tnnt3a ENSDARG00000030270 543.22 4072.40 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
28. zgc:92533 zgc:92533 536.93 4025.24
29. ppiaa ENSDARG00000009212 489.74 3671.47 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
30. si:ch211-226o13.2 429.44 3219.41 si:ch211-226o13.2
31. hmga1a ENSDARG00000028335 407.94 3058.23 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. si:ch211-251b21.1 ENSDARG00000007275 405.32 3038.59 si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
33. rpl23 ENSDARG00000053457 403.22 3022.85 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
34. mt-nd1 ENSDARG00000063895 401.65 3011.08 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
35. mylpfb ENSDARG00000002589 392.73 2944.21 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
36. myhz1.3 ENSDARG00000067997 372.81 2794.87 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
37. rpl10a ENSDARG00000042905, ENSDARG00000115649 352.36 2641.56 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
38. myl1 ENSDARG00000014196 345.02 2586.54 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
39. cyt1l ENSDARG00000036832 342.92 2570.79 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
40. zgc:112425 zgc:112425 341.87 2562.92
41. id1 ENSDARG00000040764 331.39 2484.36 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
42. ptmab ENSDARG00000101766 330.86 2480.38 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
43. zgc:66286 zgc:66286 328.76 2464.64
44. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 327.72 2456.84 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
45. col1a1a ENSDARG00000012405, ENSDARG00000116113 325.09 2437.13 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
46. acta1a ENSDARG00000036371 322.47 2417.48 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
47. nme2b.2 ENSDARG00000099420 306.22 2295.66 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
48. mt-co1 ENSDARG00000063905 292.58 2193.41 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
49. aldoab ENSDARG00000034470 284.20 2130.58 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 281.57 2110.87 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. rplp1 ENSDARG00000021864 280.00 2099.10 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. hspa8 ENSDARG00000068992, ENSDARG00000114726 277.90 2083.35 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
53. gch2 ENSDARG00000099101 267.94 2008.69 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
54. fabp3 ENSDARG00000023290 263.75 1977.27 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
55. rps23 ENSDARG00000021838 254.83 1910.40 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 253.78 1902.53 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. eef2b ENSDARG00000100371, ENSDARG00000109247 253.26 1898.63 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
58. rps27a ENSDARG00000032725, ENSDARG00000114059 251.69 1886.86 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
59. tpm3 ENSDARG00000005162 245.92 1843.61 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
60. rpl8 ENSDARG00000014867 244.87 1835.73 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. cfl1l ENSDARG00000012972 242.25 1816.09 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
62. rpl27 ENSDARG00000015128 232.81 1745.32 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
63. gapdh ENSDARG00000043457 232.29 1741.43 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
64. rpl9 ENSDARG00000037350, ENSDARG00000112384 228.09 1709.94 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
65. AL954137.2 ENSDARG00000114408 225.99 1694.20
66. rpl19 ENSDARG00000013307 212.36 1592.01 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. myhz1.2 ENSDARG00000067995 207.64 1556.63 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
68. ttnb ttnb 206.59 1548.76
69. rpl26 ENSDARG00000102317 201.35 1509.48 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
70. myl10 ENSDARG00000062592 200.82 1505.50 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
71. rps2 ENSDARG00000077291 198.73 1489.83 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. ttna ttna 198.20 1485.86
73. rps20 ENSDARG00000036044 195.58 1466.22 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. rpl18a ENSDARG00000025073 191.91 1438.71 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
75. pkmb ENSDARG00000099860 190.34 1426.94 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
76. fkbp1aa ENSDARG00000022684 189.81 1422.96 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
77. rps9 ENSDARG00000011405, ENSDARG00000113248 188.76 1415.09 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
78. icn ENSDARG00000009978 187.19 1403.32 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
79. aldoaa ENSDARG00000011665 184.05 1379.78 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
80. hmgn2 ENSDARG00000099572 181.42 1360.06 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
81. rpl36a ENSDARG00000058105, ENSDARG00000112656 181.42 1360.06 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
82. zgc:123194 zgc:123194 179.85 1348.29
83. rpl11 ENSDARG00000043509 177.75 1332.55 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
84. col1a1b ENSDARG00000035809 176.70 1324.68 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
85. rps27.1 ENSDARG00000023298 174.61 1309.01 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
86. si:dkeyp-86f7.3 si:dkeyp-86f7.3 173.56 1301.14
87. rplp2 ENSDARG00000101406 173.03 1297.17 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. rps14 ENSDARG00000036629 173.03 1297.17 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
89. rps26l ENSDARG00000030408 173.03 1297.17 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
90. rps12 ENSDARG00000036875, ENSDARG00000115157 171.99 1289.37 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
91. pfn1 ENSDARG00000088091 170.41 1277.53 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
92. pvalb4 ENSDARG00000024433 166.22 1246.11 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
93. hsp90ab1 ENSDARG00000029150 165.69 1242.14 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
94. rpl7 ENSDARG00000007320 163.07 1222.50 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
95. rpl18 ENSDARG00000029533 160.97 1206.76 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. rpl5b ENSDARG00000015862, ENSDARG00000109661 159.93 1198.96 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
97. rplp2l ENSDARG00000011201 159.40 1194.99 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
98. rps24 ENSDARG00000039347 153.11 1147.83 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
99. h3f3a 152.58 1143.86 H3 histone, family 3A, transcript variant X1
100. rpl36 ENSDARG00000100588 150.49 1128.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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