Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s46.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16498.63 123685.62
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4141.50 31047.67 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 1297.96 9730.44 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. he1a 1265.11 9484.18 hatching enzyme 1a, transcript variant X1
5. tmsb4x ENSDARG00000077777 1171.61 8783.23 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. zgc:161979_1 zgc:161979_1 1139.61 8543.34
7. apoc1l apoc1l 1085.70 8139.19
8. apobb apobb 1083.18 8120.30
9. tpma ENSDARG00000033683 1038.53 7785.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
10. actb2 ENSDARG00000037870 982.10 7362.53 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. hbbe3 ENSDARG00000038147, ENSDARG00000109344 979.57 7343.56 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
12. mt-nd2 ENSDARG00000063899 953.46 7147.82 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. zgc:161979 zgc:161979 931.56 6983.65
14. apoeb ENSDARG00000040295 891.98 6686.92 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
15. apoa2 ENSDARG00000015866 880.19 6598.54 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
16. mt-co2 ENSDARG00000063908 864.18 6478.52 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. mt-nd4 ENSDARG00000063917 854.07 6402.72 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. si:dkey-151g10.6 si:dkey-151g10.6 822.91 6169.13
19. ctslb ENSDARG00000039173, ENSDARG00000074306 798.48 5985.98 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
20. zgc:174855 ENSDARG00000094559 798.48 5985.98 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
21. apoa1a ENSDARG00000012076, ENSDARG00000110395 751.32 5632.44 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
22. mt-co3 ENSDARG00000063912 652.77 4893.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
23. ckma ENSDARG00000035327, ENSDARG00000114671 650.24 4874.67 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. hbae3 ENSDARG00000079305 621.60 4659.96 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
25. atp2a1 ENSDARG00000020574 619.92 4647.37 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
26. ckmb ENSDARG00000040565 596.34 4470.59 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
27. eef1a1l1 ENSDARG00000020850 560.12 4199.06 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. mt-atp6 ENSDARG00000063911 553.38 4148.54 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
29. actc1b ENSDARG00000099197 551.70 4135.94 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
30. CABZ01044814.2 CABZ01044814.2 489.37 3668.67
31. ppiaa ENSDARG00000009212 488.52 3662.30 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 458.20 3435.00 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. zgc:112425 zgc:112425 446.41 3346.61
34. fabp2 ENSDARG00000006427, ENSDARG00000110230 443.88 3327.64 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
35. pvalb2 ENSDARG00000002768, ENSDARG00000114085 429.56 3220.29 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
36. bhmt ENSDARG00000013430 426.19 3195.03 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
37. mylz3 ENSDARG00000017441 423.67 3176.14 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
38. eef2b ENSDARG00000100371, ENSDARG00000109247 412.72 3094.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 410.19 3075.08 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. wu:fa26c03 410.19 3075.08 wu:fa26c03
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 403.45 3024.55 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. wu:fb37b09 wu:fb37b09 400.08 2999.29
43. zgc:153129 zgc:153129 395.87 2967.73
44. hmga1a ENSDARG00000028335 393.35 2948.84 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. si:dkey-269i1.3 390.82 2929.87 si:dkey-269i1.3
46. mt-cyb ENSDARG00000063924 379.87 2847.78 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. mt-nd1 ENSDARG00000063895 350.39 2626.78 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
48. si:dkey-239j18.3 ENSDARG00000089806 348.70 2614.11 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
49. zgc:174153 ENSDARG00000079376 340.28 2550.98 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
50. tnnc2 ENSDARG00000070835, ENSDARG00000111155 331.86 2487.86 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
51. apoa4 apoa4 316.70 2374.21
52. rpl18a ENSDARG00000025073 313.33 2348.95 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. btf3 ENSDARG00000035400, ENSDARG00000116462 303.22 2273.16 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. pabpc1a ENSDARG00000017219 299.85 2247.89 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
55. rpl8 ENSDARG00000014867 294.80 2210.03 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. hbbe1.1 ENSDARG00000113599 290.59 2178.47 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
57. rpl23 ENSDARG00000053457 286.38 2146.91 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
58. krt8 ENSDARG00000058358, ENSDARG00000109279 274.58 2058.45 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
59. rps23 ENSDARG00000021838 273.74 2052.15 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
60. si:dkey-26g8.5 ENSDARG00000089750 272.06 2039.56 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
61. AL935210.1 ENSDARG00000088330 269.53 2020.59 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 265.32 1989.03 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 265.32 1989.03 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. rpl26 ENSDARG00000102317 264.48 1982.73 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
65. rpl19 ENSDARG00000013307 260.27 1951.17 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
66. rps26l ENSDARG00000030408 257.74 1932.20 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
67. ctsla ENSDARG00000007836 256.05 1919.54 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
68. hbae1_1 255.21 1913.24 hemoglobin, alpha embryonic 1
69. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 250.16 1875.38 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
70. rpl11 ENSDARG00000043509 245.95 1843.82 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. rps14 ENSDARG00000036629 234.15 1755.36 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
72. ptmab ENSDARG00000101766 228.26 1711.20 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
73. si:dkey-150i13.2 ENSDARG00000071052 223.20 1673.27 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
74. rps29 ENSDARG00000041232 218.15 1635.41 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
75. rpl9 ENSDARG00000037350, ENSDARG00000112384 217.31 1629.11 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
76. rps20 ENSDARG00000036044 216.47 1622.82 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. myhz1.3 ENSDARG00000067997 214.78 1610.15 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
78. eif5a ENSDARG00000017235 212.26 1591.25 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
79. ttna ttna 211.41 1584.88
80. rpl36 ENSDARG00000100588 202.15 1515.46 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
81. he1b 197.94 1483.90 hatching enzyme 1b
82. rps9 ENSDARG00000011405, ENSDARG00000113248 195.41 1464.93 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
83. rps27a ENSDARG00000032725, ENSDARG00000114059 194.57 1458.64 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
84. rplp1 ENSDARG00000021864 193.72 1452.26 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
85. id1 ENSDARG00000040764 192.88 1445.97 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
86. rps10 ENSDARG00000034897 188.67 1414.41 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
87. gamt ENSDARG00000070844, ENSDARG00000109945 187.83 1408.11 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
88. rps6 ENSDARG00000019778 184.46 1382.85 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
89. rpl7 ENSDARG00000007320 176.88 1326.02 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
90. si:dkey-269i1.2 si:dkey-269i1.2 176.04 1319.72
91. rpl15 ENSDARG00000009285 175.19 1313.35 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
92. rpl27 ENSDARG00000015128 175.19 1313.35 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
93. AL954137.2 ENSDARG00000114408 174.35 1307.05
94. rpl18 ENSDARG00000029533 173.51 1300.76 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
95. si:dkeyp-86f7.3 si:dkeyp-86f7.3 173.51 1300.76
96. fetub ENSDARG00000053973 172.67 1294.46 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
97. hsp90ab1 ENSDARG00000029150 172.67 1294.46 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 170.98 1281.79 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. rps2 ENSDARG00000077291 170.98 1281.79 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
100. rplp0 ENSDARG00000051783 170.14 1275.49 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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