Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s45.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18052.58 135313.66
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4108.13 30792.61 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd4 ENSDARG00000063917 1320.50 9897.85 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
4. tmsb4x ENSDARG00000077777 1227.85 9203.39 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. he1a 1181.08 8852.82 hatching enzyme 1a, transcript variant X1
6. tpma ENSDARG00000033683 1125.31 8434.80 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
7. mt-nd2 ENSDARG00000063899 1028.16 7706.60 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. apoa1b ENSDARG00000101324 894.13 6701.98 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
9. actb2 ENSDARG00000037870 841.96 6310.94 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. zgc:161979_1 zgc:161979_1 841.06 6304.19
11. apobb apobb 814.97 6108.63
12. apoc1l apoc1l 802.38 6014.26
13. mt-co3 ENSDARG00000063912 752.90 5643.38 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. apoa2 ENSDARG00000015866 727.72 5454.65 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
15. hbbe3 ENSDARG00000038147, ENSDARG00000109344 724.12 5427.66 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
16. mt-co2 ENSDARG00000063908 720.52 5400.68 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. si:dkey-151g10.6 si:dkey-151g10.6 702.53 5265.83
18. zgc:174855 ENSDARG00000094559 676.44 5070.28 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
19. ctslb ENSDARG00000039173, ENSDARG00000074306 672.85 5043.37 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
20. apoeb ENSDARG00000040295 671.95 5036.62 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
21. ckma ENSDARG00000035327, ENSDARG00000114671 667.45 5002.89 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
22. eef1a1l1 ENSDARG00000020850 640.46 4800.59 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
23. ckmb ENSDARG00000040565 629.67 4719.71 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
24. actc1b ENSDARG00000099197 617.97 4632.01 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
25. zgc:161979 zgc:161979 602.68 4517.41
26. hbae3 ENSDARG00000079305 594.59 4456.77 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
27. apoa1a ENSDARG00000012076, ENSDARG00000110395 592.79 4443.28 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
28. mt-atp6 ENSDARG00000063911 571.20 4281.45 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
29. atp2a1 ENSDARG00000020574 565.80 4240.97 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
30. zgc:112425 zgc:112425 498.34 3735.32
31. wu:fa26c03 478.55 3586.99 wu:fa26c03
32. CABZ01044814.2 CABZ01044814.2 475.85 3566.75
33. ppiaa ENSDARG00000009212 474.95 3560.00 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
34. eef2b ENSDARG00000100371, ENSDARG00000109247 449.76 3371.19 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
35. wu:fb37b09 wu:fb37b09 446.16 3344.21
36. mt-cyb ENSDARG00000063924 413.78 3101.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 410.18 3074.52 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. pvalb2 ENSDARG00000002768, ENSDARG00000114085 402.99 3020.62 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
39. zgc:153129 zgc:153129 400.29 3000.39
40. mt-nd1 ENSDARG00000063895 396.69 2973.40 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
41. mylz3 ENSDARG00000017441 392.19 2939.67 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
42. tnnc2 ENSDARG00000070835, ENSDARG00000111155 385.90 2892.53 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
43. si:dkey-150i13.2 ENSDARG00000071052 383.20 2872.29 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
44. actb1 ENSDARG00000037746, ENSDARG00000113649 376.90 2825.07 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. fabp2 ENSDARG00000006427, ENSDARG00000110230 374.20 2804.83 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
46. hmga1a ENSDARG00000028335 373.30 2798.08 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. bhmt ENSDARG00000013430 366.11 2744.19 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
48. rpl10a ENSDARG00000042905, ENSDARG00000115649 331.03 2481.25 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
49. zgc:174153 ENSDARG00000079376 331.03 2481.25 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
50. si:dkey-269i1.3 329.23 2467.75 si:dkey-269i1.3
51. btf3 ENSDARG00000035400, ENSDARG00000116462 322.03 2413.79 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 322.03 2413.79 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
53. si:dkey-239j18.3 ENSDARG00000089806 297.74 2231.72 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
54. rpl23 ENSDARG00000053457 278.85 2090.13 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
55. rpl8 ENSDARG00000014867 276.15 2069.89 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 263.56 1975.52 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. krt8 ENSDARG00000058358, ENSDARG00000109279 259.96 1948.54 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
58. rpl26 ENSDARG00000102317 259.96 1948.54 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. ctsla ENSDARG00000007836 255.47 1914.88 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
60. hbbe1.1 ENSDARG00000113599 251.87 1887.90 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
61. apoa4 apoa4 250.97 1881.15
62. rpl9 ENSDARG00000037350, ENSDARG00000112384 245.57 1840.68 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
63. si:dkey-26g8.5 ENSDARG00000089750 245.57 1840.68 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
64. ptmab ENSDARG00000101766 244.67 1833.93 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
65. pabpc1a ENSDARG00000017219 239.27 1793.46 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
66. rpl19 ENSDARG00000013307 234.78 1759.80 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rps14 ENSDARG00000036629 234.78 1759.80 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
68. myl1 ENSDARG00000014196 232.08 1739.56 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
69. rps23 ENSDARG00000021838 226.68 1699.09 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
70. rpl18a ENSDARG00000025073 225.78 1692.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
71. AL935210.1 ENSDARG00000088330 219.48 1645.12 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
72. eif5a ENSDARG00000017235 214.99 1611.46 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. rpl36a ENSDARG00000058105, ENSDARG00000112656 204.19 1530.51 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
74. acta1b ENSDARG00000055618 201.49 1510.27 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
75. rpl11 ENSDARG00000043509 201.49 1510.27 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. rps26l ENSDARG00000030408 201.49 1510.27 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. he1b 199.69 1496.78 hatching enzyme 1b
78. rpl15 ENSDARG00000009285 198.80 1490.11 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
79. cyt1l ENSDARG00000036832 197.90 1483.37 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
80. rplp0 ENSDARG00000051783 197.00 1476.62 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
81. AC024175.17 AC024175.17 196.10 1469.87
82. myhz1.3 ENSDARG00000067997 196.10 1469.87 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
83. rpl36 ENSDARG00000100588 194.30 1456.38 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
84. ttnb ttnb 192.50 1442.89
85. ttna ttna 188.00 1409.16
86. hbae1_1 187.10 1402.41 hemoglobin, alpha embryonic 1
87. mt-co1 ENSDARG00000063905 187.10 1402.41 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
88. cfl1l ENSDARG00000012972 182.60 1368.68 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
89. rpl27 ENSDARG00000015128 179.01 1341.77 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
90. tnnt3a ENSDARG00000030270 176.31 1321.54 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
91. si:ch211-226o13.2 174.51 1308.05 si:ch211-226o13.2
92. AL954137.2 ENSDARG00000114408 171.81 1287.81
93. rps9 ENSDARG00000011405, ENSDARG00000113248 167.31 1254.08 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
94. rps27a ENSDARG00000032725, ENSDARG00000114059 165.51 1240.59 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
95. rps29 ENSDARG00000041232 165.51 1240.59 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
96. si:dkey-269i1.2 si:dkey-269i1.2 164.61 1233.84
97. si:dkeyp-86f7.3 si:dkeyp-86f7.3 163.71 1227.09
98. id1 ENSDARG00000040764 162.81 1220.35 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
99. rps12 ENSDARG00000036875, ENSDARG00000115157 159.22 1193.44 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
100. pnrc2 ENSDARG00000053291, ENSDARG00000112537 158.32 1186.69 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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