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Experiment Zebrafish_28hpf_whole3_PA, section s42.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11784.28 88343.27
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4592.32 34427.27 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:161979_1 zgc:161979_1 1827.09 13697.15
4. apoa1b ENSDARG00000101324 1798.19 13480.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. apobb apobb 1690.39 12672.35
6. apoc1l apoc1l 1606.02 12039.86
7. apoeb ENSDARG00000040295 1391.99 10435.34 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
8. apoa2 ENSDARG00000015866 1387.31 10400.25 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. zgc:161979 zgc:161979 1326.38 9943.48
10. tmsb4x ENSDARG00000077777 1299.82 9744.37 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. mt-co2 ENSDARG00000063908 1258.42 9434.00 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. mt-nd2 ENSDARG00000063899 1181.87 8860.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-nd4 ENSDARG00000063917 1112.34 8338.88 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. actb2 ENSDARG00000037870 1070.94 8028.52 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. tpma ENSDARG00000033683 1041.26 7806.02 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
16. apoa1a ENSDARG00000012076, ENSDARG00000110395 1035.01 7759.16 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
17. si:dkey-151g10.6 si:dkey-151g10.6 945.18 7085.74
18. mt-co3 ENSDARG00000063912 867.07 6500.17 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. ckma ENSDARG00000035327, ENSDARG00000114671 745.99 5592.47 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
20. mt-atp6 ENSDARG00000063911 688.97 5165.00 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. fabp2 ENSDARG00000006427, ENSDARG00000110230 676.47 5071.30 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
22. atp2a1 ENSDARG00000020574 638.97 4790.17 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
23. actc1b ENSDARG00000099197 624.91 4684.77 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
24. ckmb ENSDARG00000040565 581.95 4362.71 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. bhmt ENSDARG00000013430 571.79 4286.54 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
26. eef1a1l1 ENSDARG00000020850 553.83 4151.90 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. apoa4 apoa4 533.52 3999.64
28. ppiaa ENSDARG00000009212 512.43 3841.54 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. zgc:153129 zgc:153129 467.12 3501.86
30. actb1 ENSDARG00000037746, ENSDARG00000113649 463.22 3472.62 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
31. mt-cyb ENSDARG00000063924 453.84 3402.30 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. eef2b ENSDARG00000100371, ENSDARG00000109247 451.50 3384.76 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
33. pvalb2 ENSDARG00000002768, ENSDARG00000114085 446.81 3349.60 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
34. mylz3 ENSDARG00000017441 405.41 3039.24 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
35. mt-nd1 ENSDARG00000063895 402.29 3015.85 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
36. ctsla ENSDARG00000007836 399.94 2998.23 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
37. zgc:112425 zgc:112425 396.82 2974.84
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 396.04 2968.99 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. tnnc2 ENSDARG00000070835, ENSDARG00000111155 385.10 2886.98 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
40. rpl10a ENSDARG00000042905, ENSDARG00000115649 384.32 2881.13 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
41. he1a 328.86 2465.37 hatching enzyme 1a, transcript variant X1
42. hmga1a ENSDARG00000028335 317.14 2377.50 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 308.55 2313.11 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. si:dkey-150i13.2 ENSDARG00000071052 307.77 2307.26 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
45. krt8 ENSDARG00000058358, ENSDARG00000109279 306.21 2295.57 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
46. rpl26 ENSDARG00000102317 305.43 2289.72 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
47. aldob ENSDARG00000053684 302.30 2266.25 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
48. rps23 ENSDARG00000021838 301.52 2260.41 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
49. rps26l ENSDARG00000030408 299.96 2248.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
50. myhz1.3 ENSDARG00000067997 292.93 2196.01 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
51. rpl8 ENSDARG00000014867 292.93 2196.01 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. rpl23 ENSDARG00000053457 282.77 2119.84 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. pabpc1a ENSDARG00000017219 281.99 2114.00 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
54. rpl18a ENSDARG00000025073 275.74 2067.14 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 274.18 2055.45 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 273.40 2049.60 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
57. rpl36a ENSDARG00000058105, ENSDARG00000112656 271.06 2032.06 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
58. rbp4 ENSDARG00000101199 246.06 1844.64 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
59. gamt ENSDARG00000070844, ENSDARG00000109945 244.50 1832.94 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
60. ptmab ENSDARG00000101766 242.15 1815.33 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
61. rpl9 ENSDARG00000037350, ENSDARG00000112384 241.37 1809.48 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
62. rps14 ENSDARG00000036629 237.47 1780.24 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
63. rpl19 ENSDARG00000013307 235.12 1762.63 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
64. rps20 ENSDARG00000036044 232.00 1739.24 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. rps29 ENSDARG00000041232 228.09 1709.92 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
66. rplp1 ENSDARG00000021864 226.53 1698.23 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
67. pvalb9 ENSDARG00000071601, ENSDARG00000113946 224.97 1686.53 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
68. pla2g12b ENSDARG00000015662 224.19 1680.69 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
69. dbi ENSDARG00000026369 221.84 1663.07 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
70. rpl11 ENSDARG00000043509 220.28 1651.37 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. npc2 ENSDARG00000090912 216.38 1622.14 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
72. eif5a ENSDARG00000017235 214.81 1610.37 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. fetub ENSDARG00000053973 211.69 1586.98 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
74. paics ENSDARG00000033539 210.91 1581.13 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
75. tfa ENSDARG00000016771 210.13 1575.28 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
76. zgc:174855 ENSDARG00000094559 209.35 1569.44 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
77. APOB APOB 208.56 1563.51
78. cfl1l ENSDARG00000012972 208.56 1563.51 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
79. cyt1l ENSDARG00000036832 205.44 1540.12 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
80. ctslb ENSDARG00000039173, ENSDARG00000074306 203.88 1528.43 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
81. rpl36 ENSDARG00000100588 199.19 1493.27 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
82. rps27a ENSDARG00000032725, ENSDARG00000114059 199.19 1493.27 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
83. apoc2 ENSDARG00000092155 197.63 1481.57 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
84. rpl27 ENSDARG00000015128 196.85 1475.73 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
85. zgc:66286 zgc:66286 196.85 1475.73
86. rps10 ENSDARG00000034897 194.50 1458.11 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
87. acta1b ENSDARG00000055618 192.16 1440.57 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
88. slc43a2b ENSDARG00000061120, ENSDARG00000117188 186.69 1399.56 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
89. rps15a ENSDARG00000010160 184.35 1382.02 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
90. rpl15 ENSDARG00000009285 183.57 1376.17 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
91. tnnt3a ENSDARG00000030270 182.01 1364.48 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
92. gapdh ENSDARG00000043457 181.22 1358.55 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
93. sepp1a 181.22 1358.55 selenoprotein P, plasma, 1a
94. mt-co1 ENSDARG00000063905 178.10 1335.16 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
95. ckmt1 ENSDARG00000016598, ENSDARG00000113143 177.32 1329.32 creatine kinase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-030131-611]
96. gatm ENSDARG00000036239 176.54 1323.47 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
97. rps19 ENSDARG00000030602 176.54 1323.47 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
98. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 175.76 1317.62 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
99. COX5B_1 ENSDARG00000015978 174.19 1305.85 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
100. rpl39 ENSDARG00000036316, ENSDARG00000117167 174.19 1305.85 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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