Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s29.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13281.62 99565.94
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3331.00 24970.91 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 1983.49 14869.27 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1883.94 14122.99 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-nd4 ENSDARG00000063917 1380.70 10350.45 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1251.66 9383.09 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. ckmb ENSDARG00000040565 1174.24 8802.71 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. actc1b ENSDARG00000099197 1168.71 8761.26 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mt-co3 ENSDARG00000063912 1146.59 8595.44 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. si:dkey-151g10.6 si:dkey-151g10.6 1015.71 7614.29
11. mt-atp6 ENSDARG00000063911 943.82 7075.37 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. actb2 ENSDARG00000037870 905.10 6785.10 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. tmsb4x ENSDARG00000077777 857.18 6425.87 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
14. mt-co2 ENSDARG00000063908 844.27 6329.09 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. atp2a1 ENSDARG00000020574 840.59 6301.50 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. eef1a1l1 ENSDARG00000020850 825.84 6190.93 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mylz3 ENSDARG00000017441 676.52 5071.55 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
18. mt-nd1 ENSDARG00000063895 648.87 4864.27 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 595.41 4463.50 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. zgc:161979_1 zgc:161979_1 567.76 4256.22
21. ppiaa ENSDARG00000009212 547.49 4104.27 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
22. zgc:112425 zgc:112425 547.49 4104.27
23. apoa1b ENSDARG00000101324 543.80 4076.61 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. tnnc2 ENSDARG00000070835, ENSDARG00000111155 541.96 4062.81 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 508.78 3814.08 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. apoeb ENSDARG00000040295 486.65 3648.18 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
27. hmga1a ENSDARG00000028335 473.75 3551.48 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
28. btf3 ENSDARG00000035400, ENSDARG00000116462 462.69 3468.57 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
29. apoc1l apoc1l 455.32 3413.32
30. acta1a ENSDARG00000036371 453.47 3399.45 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. zgc:66286 zgc:66286 447.94 3357.99
32. eef2b ENSDARG00000100371, ENSDARG00000109247 431.35 3233.62 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
33. myhz1.3 ENSDARG00000067997 427.67 3206.04 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
34. apoa2 ENSDARG00000015866 411.08 3081.67 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
35. rpl10a ENSDARG00000042905, ENSDARG00000115649 401.86 3012.55 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
36. acta1b ENSDARG00000055618 400.02 2998.76 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
37. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 396.33 2971.10 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
38. apobb apobb 394.49 2957.30
39. mt-cyb ENSDARG00000063924 383.42 2874.32 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rpl23 ENSDARG00000053457 370.52 2777.61 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
41. myl10 ENSDARG00000062592 359.46 2694.70 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. rpl8 ENSDARG00000014867 359.46 2694.70 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
43. rpl18a ENSDARG00000025073 353.93 2653.24 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
44. zgc:161979 zgc:161979 350.24 2625.58
45. hsp90aa1.1 ENSDARG00000010478 346.56 2597.99 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
46. rpl9 ENSDARG00000037350, ENSDARG00000112384 344.71 2584.13 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
47. rpl21 ENSDARG00000010516, ENSDARG00000110263 333.65 2501.21 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
48. fabp3 ENSDARG00000023290 324.44 2432.17 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
49. rpl26 ENSDARG00000102317 324.44 2432.17 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
50. tnni2b.1 ENSDARG00000035958 322.59 2418.30 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
51. zgc:153129 zgc:153129 317.06 2376.85
52. rps26l ENSDARG00000030408 315.22 2363.05 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. rpl11 ENSDARG00000043509 304.16 2280.14 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. rps27a ENSDARG00000032725, ENSDARG00000114059 304.16 2280.14 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. rps23 ENSDARG00000021838 300.47 2252.48 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rps14 ENSDARG00000036629 293.10 2197.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
57. myl1 ENSDARG00000014196 289.41 2169.57 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
58. rpl36 ENSDARG00000100588 283.88 2128.11 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. apoa1a ENSDARG00000012076, ENSDARG00000110395 282.04 2114.32 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
60. ttna ttna 282.04 2114.32
61. pvalb2 ENSDARG00000002768, ENSDARG00000114085 274.66 2058.99 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
62. myhz2 ENSDARG00000012944 272.82 2045.20 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 265.45 1989.95 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. tnnt3a ENSDARG00000030270 265.45 1989.95 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
65. eif5a ENSDARG00000017235 263.60 1976.08 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. ptmab ENSDARG00000101766 261.76 1962.29 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
67. rpl19 ENSDARG00000013307 259.92 1948.50 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. rpl15 ENSDARG00000009285 258.07 1934.63 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
69. aldoab ENSDARG00000034470 254.39 1907.04 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
70. pabpc1a ENSDARG00000017219 254.39 1907.04 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
71. krt8 ENSDARG00000058358, ENSDARG00000109279 252.54 1893.17 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
72. rps10 ENSDARG00000034897 250.70 1879.38 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
73. rpl27 ENSDARG00000015128 248.86 1865.58 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
74. rps2 ENSDARG00000077291 247.01 1851.72 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
75. rps29 ENSDARG00000041232 247.01 1851.72 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
76. ttnb ttnb 247.01 1851.72
77. cfl1l ENSDARG00000012972 241.48 1810.26 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
78. rpl5b ENSDARG00000015862, ENSDARG00000109661 239.64 1796.47 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
79. rps12 ENSDARG00000036875, ENSDARG00000115157 235.95 1768.80 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
80. si:dkey-150i13.2 ENSDARG00000071052 235.95 1768.80 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
81. tpm3 ENSDARG00000005162 235.95 1768.80 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
82. rplp0 ENSDARG00000051783 234.11 1755.01 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
83. rps9 ENSDARG00000011405, ENSDARG00000113248 232.27 1741.22 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
84. tnnt2c ENSDARG00000032242 228.58 1713.55 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
85. mt-co1 ENSDARG00000063905 223.05 1672.10 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
86. AC024175.17 AC024175.17 221.21 1658.31
87. rplp1 ENSDARG00000021864 217.52 1630.64 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
88. id1 ENSDARG00000040764 213.83 1602.98 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
89. rps15 ENSDARG00000070849, ENSDARG00000110979 213.83 1602.98 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
90. rpl17 ENSDARG00000057556 211.99 1589.19 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
91. rps15a ENSDARG00000010160 210.15 1575.39 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. RPL29 ENSDARG00000077717 206.46 1547.73 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. tnni2a.4 ENSDARG00000029069 206.46 1547.73 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
94. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 204.62 1533.94 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
95. rps27.1 ENSDARG00000023298 202.77 1520.07 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. rps4x ENSDARG00000014690 202.77 1520.07 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
97. AL954137.2 ENSDARG00000114408 200.93 1506.28
98. atp5g3b 200.93 1506.28 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
99. rps19 ENSDARG00000030602 199.09 1492.48 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
100. cirbp cirbp 197.24 1478.61
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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