Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s22.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18308.95 137235.34
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3299.85 24734.14 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1538.57 11532.40 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. tpma ENSDARG00000033683 1217.94 9129.11 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. mt-co2 ENSDARG00000063908 1143.70 8572.64 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd4 ENSDARG00000063917 1139.40 8540.41 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. si:dkey-151g10.6 si:dkey-151g10.6 1112.50 8338.78
8. mt-co3 ENSDARG00000063912 980.16 7346.82 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-atp6 ENSDARG00000063911 876.88 6572.68 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actb2 ENSDARG00000037870 847.83 6354.94 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. actc1b ENSDARG00000099197 813.40 6096.87 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. ckmb ENSDARG00000040565 811.24 6080.68 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
13. tmsb4x ENSDARG00000077777 735.93 5516.19 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
14. eef1a1l1 ENSDARG00000020850 705.80 5290.35 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. ckma ENSDARG00000035327, ENSDARG00000114671 704.73 5282.33 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
16. ppiaa ENSDARG00000009212 650.93 4879.07 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. mt-nd1 ENSDARG00000063895 639.10 4790.40 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. apoc1l apoc1l 608.97 4564.55
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 547.64 4104.85 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. atp2a1 ENSDARG00000020574 541.19 4056.51 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. hspa8 ENSDARG00000068992, ENSDARG00000114726 540.11 4048.41 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
22. zgc:66286 zgc:66286 517.52 3879.09
23. zgc:161979_1 zgc:161979_1 511.06 3830.67
24. zgc:112425 zgc:112425 509.99 3822.65
25. apoeb ENSDARG00000040295 502.46 3766.21 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
26. apoa1b ENSDARG00000101324 499.23 3742.00 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. hmga1a ENSDARG00000028335 491.70 3685.55 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
28. tnnc2 ENSDARG00000070835, ENSDARG00000111155 489.54 3669.36 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
29. actb1 ENSDARG00000037746, ENSDARG00000113649 485.24 3637.13 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. eef2b ENSDARG00000100371, ENSDARG00000109247 484.16 3629.04 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
31. mylz3 ENSDARG00000017441 462.65 3467.81 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
32. apoa2 ENSDARG00000015866 435.75 3266.18 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
33. rpl8 ENSDARG00000014867 435.75 3266.18 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
34. mt-cyb ENSDARG00000063924 428.22 3209.74 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. apobb apobb 426.06 3193.55
36. rpl23 ENSDARG00000053457 426.06 3193.55 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. rpl18a ENSDARG00000025073 417.46 3129.09 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
38. fabp3 ENSDARG00000023290 403.47 3024.22 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
39. zgc:161979 zgc:161979 399.17 2991.99
40. btf3 ENSDARG00000035400, ENSDARG00000116462 391.64 2935.55 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. rpl26 ENSDARG00000102317 389.48 2919.36 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. myl10 ENSDARG00000062592 387.33 2903.24 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
43. acta1a ENSDARG00000036371 365.81 2741.94 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 360.43 2701.62 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. rps26l ENSDARG00000030408 343.22 2572.62 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
46. hsp90aa1.1 ENSDARG00000010478 341.07 2556.50 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
47. rps14 ENSDARG00000036629 332.46 2491.96 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
48. rps23 ENSDARG00000021838 331.38 2483.87 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
49. rpl11 ENSDARG00000043509 326.00 2443.54 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 326.00 2443.54 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. rpl19 ENSDARG00000013307 323.85 2427.43 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
52. zgc:153129 zgc:153129 320.62 2403.22
53. acta1b ENSDARG00000055618 315.24 2362.89 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
54. eif5a ENSDARG00000017235 310.94 2330.66 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 296.95 2225.80 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
56. rpl9 ENSDARG00000037350, ENSDARG00000112384 293.73 2201.66 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
57. rpl5b ENSDARG00000015862, ENSDARG00000109661 281.89 2112.92 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
58. rpl27 ENSDARG00000015128 276.51 2072.59 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
59. rps29 ENSDARG00000041232 274.36 2056.47 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
60. rplp0 ENSDARG00000051783 273.28 2048.38 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 270.06 2024.24 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. si:dkey-150i13.2 ENSDARG00000071052 270.06 2024.24 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
63. rpl36 ENSDARG00000100588 267.90 2008.05 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. myhz1.3 ENSDARG00000067997 266.83 2000.03 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
65. apoa1a ENSDARG00000012076, ENSDARG00000110395 262.52 1967.73 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
66. rps15a ENSDARG00000010160 261.45 1959.71 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
67. ptmab ENSDARG00000101766 258.22 1935.50 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
68. rps2 ENSDARG00000077291 258.22 1935.50 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
69. rps20 ENSDARG00000036044 257.15 1927.48 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
70. rps9 ENSDARG00000011405, ENSDARG00000113248 253.92 1903.27 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
71. rps12 ENSDARG00000036875, ENSDARG00000115157 250.69 1879.06 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
72. rpl18 ENSDARG00000029533 247.46 1854.84 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. myhz2 ENSDARG00000012944 246.39 1846.82 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
74. ttna ttna 243.16 1822.61
75. rps15 ENSDARG00000070849, ENSDARG00000110979 236.70 1774.19 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
76. faua ENSDARG00000099022 234.55 1758.08 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
77. rps10 ENSDARG00000034897 232.40 1741.96 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
78. tpm3 ENSDARG00000005162 232.40 1741.96 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
79. si:dkeyp-86f7.3 si:dkeyp-86f7.3 229.17 1717.75
80. rps6 ENSDARG00000019778 228.10 1709.73 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
81. fabp2 ENSDARG00000006427, ENSDARG00000110230 223.79 1677.43 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
82. rplp1 ENSDARG00000021864 221.64 1661.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
83. myl1 ENSDARG00000014196 220.56 1653.21 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
84. rpl15 ENSDARG00000009285 220.56 1653.21 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
85. rpl7 ENSDARG00000007320 220.56 1653.21 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
86. id1 ENSDARG00000040764 215.18 1612.89 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
87. atp5g3b 214.11 1604.87 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
88. rps5 ENSDARG00000043453 211.96 1588.75 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
89. tnni2b.1 ENSDARG00000035958 210.88 1580.66 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
90. pabpc1a ENSDARG00000017219 209.80 1572.56 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
91. tnnt3a ENSDARG00000030270 209.80 1572.56 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
92. si:ch1073-429i10.3 208.73 1564.54 si:ch1073-429i10.3, transcript variant X2
93. RPL29 ENSDARG00000077717 207.65 1556.45 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
94. tnnt2c ENSDARG00000032242 207.65 1556.45 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
95. rpl6 ENSDARG00000058451 195.82 1467.78 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. aldoaa ENSDARG00000011665 193.67 1451.66 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
97. rps19 ENSDARG00000030602 192.59 1443.56 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
98. ATP5B 191.51 1435.47 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
99. rpsa ENSDARG00000019181 191.51 1435.47 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
100. cox8a ENSDARG00000095273 190.44 1427.45 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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