Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s21.

Sample reads: 133,389. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18618.14 139578.21
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3363.45 25215.43 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1477.16 11074.11 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. tpma ENSDARG00000033683 1334.42 10004.00 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. si:dkey-151g10.6 si:dkey-151g10.6 1037.46 7777.73
6. mt-co3 ENSDARG00000063912 955.89 7166.21 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
7. mt-co2 ENSDARG00000063908 920.20 6898.64 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. ckmb ENSDARG00000040565 875.59 6564.20 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. actb2 ENSDARG00000037870 874.32 6554.68 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. mt-atp6 ENSDARG00000063911 822.06 6162.90 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. mt-nd4 ENSDARG00000063917 791.47 5933.57 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. eef1a1l1 ENSDARG00000020850 788.93 5914.52 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. actc1b ENSDARG00000099197 786.38 5895.41 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. tmsb4x ENSDARG00000077777 767.26 5752.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. ckma ENSDARG00000035327, ENSDARG00000114671 758.34 5685.19 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
16. ppiaa ENSDARG00000009212 619.42 4643.73 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. apoc1l apoc1l 597.75 4481.27
18. apoeb ENSDARG00000040295 582.45 4366.57 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 550.59 4127.71 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. atp2a1 ENSDARG00000020574 549.32 4118.19 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. zgc:112425 zgc:112425 535.30 4013.09
22. zgc:66286 zgc:66286 495.79 3716.88
23. actb1 ENSDARG00000037746, ENSDARG00000113649 481.77 3611.78 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. zgc:161979_1 zgc:161979_1 479.22 3592.66
25. apoa2 ENSDARG00000015866 467.75 3506.67 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. mt-nd1 ENSDARG00000063895 462.65 3468.44 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. apoa1b ENSDARG00000101324 456.28 3420.68 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
28. eef2b ENSDARG00000100371, ENSDARG00000109247 451.18 3382.45 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
29. acta1a ENSDARG00000036371 449.90 3372.85 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
30. hmga1a ENSDARG00000028335 448.63 3363.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. zgc:161979 zgc:161979 446.08 3344.21
32. hsp90aa1.1 ENSDARG00000010478 419.32 3143.60 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 416.77 3124.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. apobb apobb 393.83 2952.50
35. rpl26 ENSDARG00000102317 386.18 2895.15 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. mylz3 ENSDARG00000017441 382.35 2866.44 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
37. btf3 ENSDARG00000035400, ENSDARG00000116462 381.08 2856.92 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
38. rpl23 ENSDARG00000053457 381.08 2856.92 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. rpl18a ENSDARG00000025073 374.71 2809.16 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
40. zgc:153129 zgc:153129 370.88 2780.45
41. tnnc2 ENSDARG00000070835, ENSDARG00000111155 368.34 2761.41 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
42. si:dkey-150i13.2 ENSDARG00000071052 363.24 2723.17 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 346.67 2598.95 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. ttna ttna 325.00 2436.49
45. AC024175.17 AC024175.17 308.43 2312.27
46. rpl8 ENSDARG00000014867 308.43 2312.27 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
47. rpl19 ENSDARG00000013307 304.61 2283.63 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
48. rps2 ENSDARG00000077291 303.33 2274.03 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
49. myl10 ENSDARG00000062592 302.06 2264.51 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 300.79 2254.99 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. mt-cyb ENSDARG00000063924 299.51 2245.39 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
52. myhz1.3 ENSDARG00000067997 293.14 2197.64 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
53. rpl11 ENSDARG00000043509 290.59 2178.52 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. rps23 ENSDARG00000021838 289.32 2169.00 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 284.22 2130.77 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. rps14 ENSDARG00000036629 282.94 2121.17 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
57. apoa1a ENSDARG00000012076, ENSDARG00000110395 276.57 2073.42 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
58. myhz2 ENSDARG00000012944 275.30 2063.89 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
59. eif5a ENSDARG00000017235 270.20 2025.66 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
60. pabpc1a ENSDARG00000017219 270.20 2025.66 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
61. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 257.45 1930.08 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
62. rps15a ENSDARG00000010160 253.63 1901.44 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
63. fabp3 ENSDARG00000023290 252.35 1891.84 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
64. tnnt2c ENSDARG00000032242 249.81 1872.80 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
65. acta1b ENSDARG00000055618 243.43 1824.97 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
66. tnni2b.1 ENSDARG00000035958 240.88 1805.85 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
67. rps4x ENSDARG00000014690 238.33 1786.73 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
68. rpl27 ENSDARG00000015128 237.06 1777.21 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
69. ttnb ttnb 233.24 1748.58
70. cfl1l ENSDARG00000012972 231.96 1738.98 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
71. rps6 ENSDARG00000019778 229.41 1719.86 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
72. id1 ENSDARG00000040764 225.59 1691.22 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
73. rps9 ENSDARG00000011405, ENSDARG00000113248 224.31 1681.63 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
74. atp5g3b 223.04 1672.11 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
75. rps27a ENSDARG00000032725, ENSDARG00000114059 223.04 1672.11 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
76. rplp0 ENSDARG00000051783 221.77 1662.59 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
77. rps26l ENSDARG00000030408 221.77 1662.59 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
78. rps12 ENSDARG00000036875, ENSDARG00000115157 220.49 1652.99 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
79. rpl15 ENSDARG00000009285 216.67 1624.35 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
80. RPL29 ENSDARG00000077717 210.30 1576.60 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
81. fabp2 ENSDARG00000006427, ENSDARG00000110230 210.30 1576.60 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 210.30 1576.60 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rps10 ENSDARG00000034897 209.02 1567.00 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
84. krt8 ENSDARG00000058358, ENSDARG00000109279 206.47 1547.88 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
85. rplp1 ENSDARG00000021864 200.10 1500.13 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
86. aldoab ENSDARG00000034470 198.82 1490.53 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
87. col1a1b ENSDARG00000035809 198.82 1490.53 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
88. mt-co1 ENSDARG00000063905 198.82 1490.53 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
89. myl1 ENSDARG00000014196 198.82 1490.53 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
90. rps27.1 ENSDARG00000023298 198.82 1490.53 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. tnnt3a ENSDARG00000030270 195.00 1461.89 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
92. cirbp cirbp 193.73 1452.37
93. ptmab ENSDARG00000101766 193.73 1452.37 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
94. rps20 ENSDARG00000036044 193.73 1452.37 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
95. rpl18 ENSDARG00000029533 191.18 1433.26 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. tpm3 ENSDARG00000005162 191.18 1433.26 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
97. rps5 ENSDARG00000043453 188.63 1414.14 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
98. rpl7 ENSDARG00000007320 187.35 1404.54 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
99. rps15 ENSDARG00000070849, ENSDARG00000110979 187.35 1404.54 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
100. rpsa ENSDARG00000019181 184.80 1385.43 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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