Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s2.

Sample reads: 133,398. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23393.61 175366.44
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5017.36 37611.83 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2358.01 17676.44 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoc1l apoc1l 2271.92 17031.08
5. si:dkey-151g10.6 si:dkey-151g10.6 1018.78 7637.12
6. actb2 ENSDARG00000037870 961.38 7206.83 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. mt-co2 ENSDARG00000063908 851.37 6382.16 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. ppiaa ENSDARG00000009212 765.28 5736.80 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. eef1a1l1 ENSDARG00000020850 722.23 5414.08 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. mt-nd4 ENSDARG00000063917 707.88 5306.51 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. eef2b ENSDARG00000100371, ENSDARG00000109247 688.75 5163.10 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
12. id1 ENSDARG00000040764 674.40 5055.53 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
13. mt-nd2 ENSDARG00000063899 674.40 5055.53 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. apoeb ENSDARG00000040295 664.84 4983.87 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
15. hmga1a ENSDARG00000028335 617.01 4625.32 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
16. mt-co3 ENSDARG00000063912 569.18 4266.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. actb1 ENSDARG00000037746, ENSDARG00000113649 559.61 4195.03 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 545.26 4087.45 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. si:dkey-150i13.2 ENSDARG00000071052 530.91 3979.88 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
20. rps26l ENSDARG00000030408 516.56 3872.31 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
21. col1a1a ENSDARG00000012405, ENSDARG00000116113 463.95 3477.93 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
22. ptmab ENSDARG00000101766 454.38 3406.19 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
23. zgc:112425 zgc:112425 454.38 3406.19
24. pabpc1a ENSDARG00000017219 435.25 3262.78 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
25. rpl18a ENSDARG00000025073 435.25 3262.78 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. rpl26 ENSDARG00000102317 435.25 3262.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
27. rpl10a ENSDARG00000042905, ENSDARG00000115649 425.69 3191.12 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
28. efemp2a ENSDARG00000094324 392.21 2940.14 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
29. rpl8 ENSDARG00000014867 387.42 2904.23 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. rpl36 ENSDARG00000100588 382.64 2868.40 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
31. rpl23 ENSDARG00000053457 368.29 2760.83 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. rps14 ENSDARG00000036629 368.29 2760.83 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
33. cfl1l ENSDARG00000012972 358.72 2689.09 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
34. rps23 ENSDARG00000021838 349.16 2617.42 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 344.38 2581.59 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. si:ch1073-429i10.3 344.38 2581.59 si:ch1073-429i10.3, transcript variant X2
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 339.59 2545.68 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. rpl36a ENSDARG00000058105, ENSDARG00000112656 325.24 2438.11 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
39. btf3 ENSDARG00000035400, ENSDARG00000116462 315.68 2366.44 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. rpl11 ENSDARG00000043509 301.33 2258.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
41. rpl9 ENSDARG00000037350, ENSDARG00000112384 301.33 2258.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
42. bcam ENSDARG00000090190 296.55 2223.04 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
43. krt8 ENSDARG00000058358, ENSDARG00000109279 291.76 2187.13 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
44. mt-cyb ENSDARG00000063924 277.41 2079.56 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
45. hsp90ab1 ENSDARG00000029150 272.63 2043.73 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
46. rps12 ENSDARG00000036875, ENSDARG00000115157 272.63 2043.73 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
47. rps15a ENSDARG00000010160 272.63 2043.73 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
48. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 263.06 1971.99 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
49. mt-atp6 ENSDARG00000063911 263.06 1971.99 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
50. rpl27 ENSDARG00000015128 263.06 1971.99 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
51. rpl39 ENSDARG00000036316, ENSDARG00000117167 263.06 1971.99 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
52. RPL29 ENSDARG00000077717 258.28 1936.15 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
53. rpl18 ENSDARG00000029533 258.28 1936.15 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
54. rps27.1 ENSDARG00000023298 258.28 1936.15 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
55. rps29 ENSDARG00000041232 253.50 1900.32 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
56. AL954137.2 ENSDARG00000114408 243.93 1828.58
57. rpl15 ENSDARG00000009285 239.15 1792.75 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
58. faua ENSDARG00000099022 229.58 1721.01 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
59. rpl19 ENSDARG00000013307 229.58 1721.01 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
60. rpsa ENSDARG00000019181 229.58 1721.01 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
61. zgc:92061 zgc:92061 229.58 1721.01
62. eif5a ENSDARG00000017235 224.80 1685.18 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
63. AC024175.17 AC024175.17 220.02 1649.34
64. hmgn2 ENSDARG00000099572 220.02 1649.34 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
65. rplp1 ENSDARG00000021864 220.02 1649.34 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. gnb2l1 215.23 1613.44 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
67. krt18 ENSDARG00000018404, ENSDARG00000109528 215.23 1613.44 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
68. rpl7 ENSDARG00000007320 215.23 1613.44 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. rps15 ENSDARG00000070849, ENSDARG00000110979 215.23 1613.44 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
70. zgc:165571 zgc:165571 210.45 1577.60
71. rpl5b ENSDARG00000015862, ENSDARG00000109661 205.67 1541.77 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
72. ntd5 ENSDARG00000040944 200.89 1505.94 ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
73. rps2 ENSDARG00000077291 200.89 1505.94 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
74. rps6 ENSDARG00000019778 200.89 1505.94 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
75. si:dkeyp-86f7.3 si:dkeyp-86f7.3 200.89 1505.94
76. h3f3a 196.10 1470.03 H3 histone, family 3A, transcript variant X1
77. pnrc2 ENSDARG00000053291, ENSDARG00000112537 191.32 1434.20 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
78. rpl14 ENSDARG00000103433 191.32 1434.20 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
79. rps10 ENSDARG00000034897 191.32 1434.20 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
80. rpl6 ENSDARG00000058451 186.54 1398.37 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
81. cx43.4 ENSDARG00000007099 181.75 1362.46 connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
82. fkbp1aa ENSDARG00000022684 181.75 1362.46 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
83. rps19 ENSDARG00000030602 181.75 1362.46 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
84. cyt1l ENSDARG00000036832 176.97 1326.63 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
85. rps9 ENSDARG00000011405, ENSDARG00000113248 176.97 1326.63 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
86. zgc:153129 zgc:153129 176.97 1326.63
87. rplp2 ENSDARG00000101406 172.19 1290.79 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. rps4x ENSDARG00000014690 172.19 1290.79 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
89. mt-nd1 ENSDARG00000063895 167.40 1254.89 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
90. pfn1 ENSDARG00000088091 167.40 1254.89 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
91. rps20 ENSDARG00000036044 167.40 1254.89 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
92. cirbp cirbp 162.62 1219.05
93. rpl34 ENSDARG00000029500 162.62 1219.05 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
94. rps13 ENSDARG00000036298, ENSDARG00000112818 162.62 1219.05 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
95. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 157.84 1183.22 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
96. pcna ENSDARG00000054155 157.84 1183.22 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
97. rpl35a ENSDARG00000088030 157.84 1183.22 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
98. rps27.2 ENSDARG00000055475 157.84 1183.22 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
99. rps5 ENSDARG00000043453 157.84 1183.22 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
100. CABZ01074130.1 ENSDARG00000105274 153.06 1147.39
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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