Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s13.

Sample reads: 133,397. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17059.92 127888.05
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4119.57 30881.96 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. si:dkey-151g10.6 si:dkey-151g10.6 1316.01 9865.34
4. mt-nd2 ENSDARG00000063899 1211.48 9081.74 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. actb2 ENSDARG00000037870 1037.26 7775.72 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. tmsb4x ENSDARG00000077777 986.34 7394.00 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. eef1a1l1 ENSDARG00000020850 911.29 6831.40 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. mt-co2 ENSDARG00000063908 871.09 6530.04 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. ppiaa ENSDARG00000009212 828.20 6208.52 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. mt-nd4 ENSDARG00000063917 814.80 6108.07 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-co3 ENSDARG00000063912 720.99 5404.83 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. zgc:112425 zgc:112425 704.91 5284.29
13. hspa8 ENSDARG00000068992, ENSDARG00000114726 637.90 4781.96 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
14. hmga1a ENSDARG00000028335 632.54 4741.78 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
15. eef2b ENSDARG00000100371, ENSDARG00000109247 603.06 4520.78 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
16. hbbe3 ENSDARG00000038147, ENSDARG00000109344 581.62 4360.06 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
17. rpl18a ENSDARG00000025073 557.50 4179.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 549.46 4118.97 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. mt-atp6 ENSDARG00000063911 544.09 4078.72 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 533.37 3998.36 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. tpma ENSDARG00000033683 506.57 3797.45 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
22. btf3 ENSDARG00000035400, ENSDARG00000116462 501.21 3757.27 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
23. myl10 ENSDARG00000062592 495.85 3717.09 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
24. actc1b ENSDARG00000099197 479.77 3596.55 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
25. rpl23 ENSDARG00000053457 477.09 3576.46 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. zgc:66286 zgc:66286 474.41 3556.37
27. rpl9 ENSDARG00000037350, ENSDARG00000112384 471.73 3536.28 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
28. rpl8 ENSDARG00000014867 444.92 3335.30 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. id1 ENSDARG00000040764 442.24 3315.21 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 431.52 3234.85 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. rps23 ENSDARG00000021838 412.76 3094.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
32. efemp2a ENSDARG00000094324 410.08 3074.13 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
33. rpl26 ENSDARG00000102317 402.04 3013.85 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. acta1a ENSDARG00000036371 380.60 2853.13 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
35. hsp90aa1.1 ENSDARG00000010478 380.60 2853.13 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 361.84 2712.50 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. mt-nd1 ENSDARG00000063895 359.16 2692.41 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
38. rps26l ENSDARG00000030408 348.44 2612.05 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
39. rps27a ENSDARG00000032725, ENSDARG00000114059 348.44 2612.05 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
40. rpl19 ENSDARG00000013307 343.07 2571.79 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
41. rps14 ENSDARG00000036629 343.07 2571.79 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
42. rpl11 ENSDARG00000043509 340.39 2551.70 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
43. rpl27 ENSDARG00000015128 337.71 2531.61 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
44. rplp1 ENSDARG00000021864 335.03 2511.52 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. rpl36 ENSDARG00000100588 324.31 2431.16 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
46. eif5a ENSDARG00000017235 316.27 2370.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
47. mt-cyb ENSDARG00000063924 316.27 2370.89 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
48. ckma ENSDARG00000035327, ENSDARG00000114671 313.59 2350.80 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
49. AC024175.17 AC024175.17 305.55 2290.53
50. rpl15 ENSDARG00000009285 302.87 2270.44 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
51. rps12 ENSDARG00000036875, ENSDARG00000115157 302.87 2270.44 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
52. rps10 ENSDARG00000034897 294.83 2210.16 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
53. rps2 ENSDARG00000077291 294.83 2210.16 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
54. rps15 ENSDARG00000070849, ENSDARG00000110979 292.15 2190.07 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
55. pabpc1a ENSDARG00000017219 286.79 2149.89 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
56. ckmb ENSDARG00000040565 284.11 2129.80 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
57. rplp0 ENSDARG00000051783 284.11 2129.80 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
58. rps15a ENSDARG00000010160 284.11 2129.80 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
59. rpl5b ENSDARG00000015862, ENSDARG00000109661 270.71 2029.35 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
60. ptmab ENSDARG00000101766 268.03 2009.26 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
61. rpsa ENSDARG00000019181 268.03 2009.26 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
62. rpl18 ENSDARG00000029533 262.67 1969.08 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
63. RPL29 ENSDARG00000077717 254.63 1908.81 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
64. hbae3 ENSDARG00000079305 254.63 1908.81 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
65. faua ENSDARG00000099022 251.95 1888.72 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
66. tpm3 ENSDARG00000005162 251.95 1888.72 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
67. rps29 ENSDARG00000041232 249.27 1868.63 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
68. cox8a ENSDARG00000095273 246.58 1848.46 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
69. rps6 ENSDARG00000019778 246.58 1848.46 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
70. si:dkey-150i13.2 ENSDARG00000071052 246.58 1848.46 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
71. rps20 ENSDARG00000036044 243.90 1828.37 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. rps4x ENSDARG00000014690 243.90 1828.37 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
73. cd81 cd81 241.22 1808.28
74. AL954137.2 ENSDARG00000114408 235.86 1768.10
75. tnnc2 ENSDARG00000070835, ENSDARG00000111155 235.86 1768.10 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
76. col1a1a ENSDARG00000012405, ENSDARG00000116113 233.18 1748.01 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
77. hsp90ab1 ENSDARG00000029150 227.82 1707.83 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
78. rpl17 ENSDARG00000057556 227.82 1707.83 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
79. rpl7 ENSDARG00000007320 227.82 1707.83 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
80. hmgn2 ENSDARG00000099572 225.14 1687.74 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
81. rps27.1 ENSDARG00000023298 225.14 1687.74 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
82. cfl1l ENSDARG00000012972 222.46 1667.65 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
83. rpl6 ENSDARG00000058451 219.78 1647.56 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
84. tnni2b.1 ENSDARG00000035958 219.78 1647.56 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
85. cirbp cirbp 217.10 1627.47
86. rps5 ENSDARG00000043453 217.10 1627.47 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
87. cyt1l ENSDARG00000036832 214.42 1607.38 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
88. rps19 ENSDARG00000030602 214.42 1607.38 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
89. si:ch1073-429i10.3 214.42 1607.38 si:ch1073-429i10.3, transcript variant X2
90. tnnt2c ENSDARG00000032242 211.74 1587.29 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
91. zgc:123194 zgc:123194 206.38 1547.11
92. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 203.70 1527.02 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
93. gnb2l1 201.02 1506.93 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
94. npm1a ENSDARG00000014329, ENSDARG00000113199 201.02 1506.93 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
95. col2a1a ENSDARG00000069093, ENSDARG00000111202 198.34 1486.84 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
96. smyhc1 ENSDARG00000099959, ENSDARG00000115916 195.66 1466.75 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
97. krt8 ENSDARG00000058358, ENSDARG00000109279 192.98 1446.66 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
98. rplp2l ENSDARG00000011201 190.30 1426.57 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
99. si:dkeyp-86f7.3 si:dkeyp-86f7.3 190.30 1426.57
100. cfl1 ENSDARG00000021124 187.62 1406.48 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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