Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s7.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9771.51 73248.15
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3398.79 25477.65 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-co2 ENSDARG00000063908 2549.09 19108.22 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. mt-nd4 ENSDARG00000063917 2124.24 15923.50 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. slc1a5 ENSDARG00000099186 1699.39 12738.79 solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
6. BX511252.1 BX511252.1 1274.55 9554.15
7. CABZ01111496.1 ENSDARG00000003041 1274.55 9554.15 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
8. actc1b ENSDARG00000099197 1274.55 9554.15 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. he1a 1274.55 9554.15 hatching enzyme 1a, transcript variant X1
10. mt-cyb ENSDARG00000063924 1274.55 9554.15 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
11. mt-nd1 ENSDARG00000063895 1274.55 9554.15 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1274.55 9554.15 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. ppiaa ENSDARG00000009212 1274.55 9554.15 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
14. rps20 ENSDARG00000036044 1274.55 9554.15 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
15. stip1 ENSDARG00000004906 1274.55 9554.15 stress-induced phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-041121-17]
16. zgc:112425 zgc:112425 1274.55 9554.15
17. zgc:92533 zgc:92533 1274.55 9554.15
18. OLFML2A ENSDARG00000005648 849.70 6369.43 olfactomedin-like 2A [Source:ZFIN;Acc:ZDB-GENE-081105-107]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 849.70 6369.43 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. anxa1c ENSDARG00000104359 849.70 6369.43 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
21. apoa1b ENSDARG00000101324 849.70 6369.43 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. apoc1l apoc1l 849.70 6369.43
23. atp5g3b 849.70 6369.43 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
24. cdkn1c cdkn1c 849.70 6369.43
25. cfl1 ENSDARG00000021124 849.70 6369.43 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
26. ckma ENSDARG00000035327, ENSDARG00000114671 849.70 6369.43 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
27. col1a1b ENSDARG00000035809 849.70 6369.43 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
28. drap1 ENSDARG00000041203 849.70 6369.43 DR1-associated protein 1 (negative cofactor 2 alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-400]
29. dynll1 ENSDARG00000058454 849.70 6369.43 dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
30. eef1a1l1 ENSDARG00000020850 849.70 6369.43 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. fam204a ENSDARG00000039699, ENSDARG00000114877 849.70 6369.43 family with sequence similarity 204, member A [Source:ZFIN;Acc:ZDB-GENE-040718-271]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 849.70 6369.43 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. mphosph10 ENSDARG00000012495 849.70 6369.43 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-2146]
34. mt-nd2 ENSDARG00000063899 849.70 6369.43 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
35. myhz1.3 ENSDARG00000067997 849.70 6369.43 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
36. pabpc1a ENSDARG00000017219 849.70 6369.43 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
37. rpl17 ENSDARG00000057556 849.70 6369.43 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
38. rpl34 ENSDARG00000029500 849.70 6369.43 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
39. rpl36a ENSDARG00000058105, ENSDARG00000112656 849.70 6369.43 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
40. rpl6 ENSDARG00000058451 849.70 6369.43 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
41. rps23 ENSDARG00000021838 849.70 6369.43 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. rps26l ENSDARG00000030408 849.70 6369.43 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
43. rps27.2 ENSDARG00000055475 849.70 6369.43 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
44. sdhdb ENSDARG00000030139 849.70 6369.43 succinate dehydrogenase complex, subunit D, integral membrane protein b [Source:ZFIN;Acc:ZDB-GENE-040822-17]
45. tmsb4x ENSDARG00000077777 849.70 6369.43 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
46. tnnc2 ENSDARG00000070835, ENSDARG00000111155 849.70 6369.43 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
47. tubb4b ENSDARG00000002344 849.70 6369.43 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
48. zfand5b ENSDARG00000002271 849.70 6369.43 zinc finger, AN1-type domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-875]
49. zgc:161979 zgc:161979 849.70 6369.43
50. ACVR2B 424.85 3184.72 activin A receptor, type IIB
51. C5H9orf41 C5H9orf41 424.85 3184.72
52. CABZ01007794.1 CABZ01007794.1 424.85 3184.72
53. CORO1C CORO1C 424.85 3184.72
54. CU633999.1 ENSDARG00000098197 424.85 3184.72
55. DUSP28 ENSDARG00000059695 424.85 3184.72 dual specificity phosphatase 28 [Source:ZFIN;Acc:ZDB-GENE-131127-257]
56. FRMPD1_1 FRMPD1_1 424.85 3184.72
57. HNRNPAB HNRNPAB 424.85 3184.72
58. IGSF8 ENSDARG00000038467 424.85 3184.72 immunoglobulin superfamily, member 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2444]
59. KRT23 KRT23 424.85 3184.72
60. PLD5 PLD5 424.85 3184.72
61. RPS17L RPS17L 424.85 3184.72
62. SNORA38 SNORA38 424.85 3184.72
63. TNRC6A ENSDARG00000079688 424.85 3184.72 trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
64. a2ml ENSDARG00000056314 424.85 3184.72 alpha-2-macroglobulin-like [Source:ZFIN;Acc:ZDB-GENE-090212-1]
65. aamp ENSDARG00000045019 424.85 3184.72 angio-associated, migratory cell protein [Source:ZFIN;Acc:ZDB-GENE-040426-2370]
66. acta1b ENSDARG00000055618 424.85 3184.72 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
67. ahcy ENSDARG00000005191 424.85 3184.72 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
68. aldh4a1 ENSDARG00000038207 424.85 3184.72 aldehyde dehydrogenase 4 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1179]
69. anapc16 ENSDARG00000013822 424.85 3184.72 anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
70. ankhd1 ENSDARG00000077860 424.85 3184.72 ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
71. ankra2 ENSDARG00000035399, ENSDARG00000111289 424.85 3184.72 ankyrin repeat, family A (RFXANK-like), 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2141]
72. apoa2 ENSDARG00000015866 424.85 3184.72 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
73. apoa4 apoa4 424.85 3184.72
74. arf6b ENSDARG00000052928 424.85 3184.72 ADP-ribosylation factor 6b [Source:ZFIN;Acc:ZDB-GENE-030131-9056]
75. arid4a ENSDARG00000043873 424.85 3184.72 AT rich interactive domain 4A (RBP1-like) [Source:ZFIN;Acc:ZDB-GENE-050809-105]
76. arih2 ENSDARG00000012848 424.85 3184.72 ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
77. atp2b3b ENSDARG00000023445 424.85 3184.72 ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
78. bcar1 ENSDARG00000056525 424.85 3184.72 BCAR1, Cas family scaffold protein [Source:ZFIN;Acc:ZDB-GENE-030131-2774]
79. bet1 ENSDARG00000034885, ENSDARG00000113480 424.85 3184.72 Bet1 golgi vesicular membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-040625-3]
80. cahz ENSDARG00000011166 424.85 3184.72 carbonic anhydrase [Source:ZFIN;Acc:ZDB-GENE-980526-39]
81. calrl calrl 424.85 3184.72
82. ccar1 ENSDARG00000074759, ENSDARG00000114899 424.85 3184.72 cell division cycle and apoptosis regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-146]
83. ccdc25 ENSDARG00000021753 424.85 3184.72 coiled-coil domain containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-1389]
84. cct3 ENSDARG00000016173 424.85 3184.72 chaperonin containing TCP1, subunit 3 (gamma) [Source:ZFIN;Acc:ZDB-GENE-020419-5]
85. cct5 ENSDARG00000045399 424.85 3184.72 chaperonin containing TCP1, subunit 5 (epsilon) [Source:ZFIN;Acc:ZDB-GENE-030131-977]
86. cct6a ENSDARG00000021252 424.85 3184.72 chaperonin containing TCP1, subunit 6A (zeta 1) [Source:ZFIN;Acc:ZDB-GENE-011018-2]
87. cd164 ENSDARG00000013628 424.85 3184.72 CD164 molecule, sialomucin [Source:ZFIN;Acc:ZDB-GENE-030131-1598]
88. chd4b ENSDARG00000025789 424.85 3184.72 chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
89. chmp2bb ENSDARG00000002190 424.85 3184.72 charged multivesicular body protein 2Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2539]
90. chtopa ENSDARG00000057234 424.85 3184.72 chromatin target of PRMT1a [Source:ZFIN;Acc:ZDB-GENE-030131-210]
91. cirbp cirbp 424.85 3184.72
92. ckmb ENSDARG00000040565 424.85 3184.72 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
93. col11a1a ENSDARG00000026165, ENSDARG00000115341 424.85 3184.72 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
94. cox4i1 ENSDARG00000032970 424.85 3184.72 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
95. cox6c ENSDARG00000038577 424.85 3184.72 cytochrome c oxidase subunit 6C [Source:ZFIN;Acc:ZDB-GENE-040724-95]
96. cstf3 ENSDARG00000018904 424.85 3184.72 cleavage stimulation factor, 3' pre-RNA, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1997]
97. ctsd ENSDARG00000057698, ENSDARG00000110172, ENSDARG00000113876 424.85 3184.72 cathepsin D [Source:ZFIN;Acc:ZDB-GENE-010131-8]
98. ctslb ENSDARG00000039173, ENSDARG00000074306 424.85 3184.72 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
99. cyt1l ENSDARG00000036832 424.85 3184.72 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
100. ddx39aa ENSDARG00000006225, ENSDARG00000116665 424.85 3184.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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