Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s6.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11878.29 89041.42
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3654.86 27397.37 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 3654.86 27397.37 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. hoxb4a ENSDARG00000013533 1827.43 13698.69 homeobox B4a [Source:ZFIN;Acc:ZDB-GENE-990415-105]
5. mt-atp6 ENSDARG00000063911 1827.43 13698.69 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
6. mt-nd4 ENSDARG00000063917 1827.43 13698.69 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. pabpc1a ENSDARG00000017219 1827.43 13698.69 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
8. ppiaa ENSDARG00000009212 1827.43 13698.69 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. rpl18a ENSDARG00000025073 1827.43 13698.69 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
10. rpl19 ENSDARG00000013307 1827.43 13698.69 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
11. rps29 ENSDARG00000041232 1827.43 13698.69 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
12. zgc:56493 ENSDARG00000031435 1827.43 13698.69 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
13. ADAMTS3 ENSDARG00000060127 913.71 6849.31 ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
14. AGO1 ENSDARG00000092644 913.71 6849.31 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
15. AMBRA1_1 AMBRA1_1 913.71 6849.31
16. ARHGAP23 ARHGAP23 913.71 6849.31
17. C3H19orf43 C3H19orf43 913.71 6849.31
18. CNDP1 CNDP1 913.71 6849.31
19. CR388095.3 CR388095.3 913.71 6849.31
20. CU463857.1 CU463857.1 913.71 6849.31
21. CU929431.1 CU929431.1 913.71 6849.31
22. EIF1B ENSDARG00000029445 913.71 6849.31 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
23. EPT1 EPT1 913.71 6849.31
24. FAM35A FAM35A 913.71 6849.31
25. SERBP1 SERBP1 913.71 6849.31
26. UBC ENSDARG00000102632 913.71 6849.31 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
27. acsl3b ENSDARG00000014674 913.71 6849.31 acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
28. acta1a ENSDARG00000036371 913.71 6849.31 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. acta1b ENSDARG00000055618 913.71 6849.31 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
30. actb2 ENSDARG00000037870 913.71 6849.31 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
31. alas1 ENSDARG00000021059 913.71 6849.31 aminolevulinate, delta-, synthase 1 [Source:ZFIN;Acc:ZDB-GENE-001229-2]
32. apoa1a ENSDARG00000012076, ENSDARG00000110395 913.71 6849.31 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
33. apoa1b ENSDARG00000101324 913.71 6849.31 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
34. apobb apobb 913.71 6849.31
35. apoc1l apoc1l 913.71 6849.31
36. atoh8 ENSDARG00000037555, ENSDARG00000110248 913.71 6849.31 atonal bHLH transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-061215-7]
37. b3gnt5b ENSDARG00000004396 913.71 6849.31 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5b [Source:ZFIN;Acc:ZDB-GENE-041010-166]
38. blcap ENSDARG00000052073 913.71 6849.31 bladder cancer associated protein [Source:ZFIN;Acc:ZDB-GENE-000330-7]
39. camkmt ENSDARG00000095224 913.71 6849.31 calmodulin-lysine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-090313-49]
40. camsap2 camsap2 913.71 6849.31
41. ccnd1 ENSDARG00000101637 913.71 6849.31 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
42. chd4b ENSDARG00000025789 913.71 6849.31 chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
43. ckma ENSDARG00000035327, ENSDARG00000114671 913.71 6849.31 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
44. ckmb ENSDARG00000040565 913.71 6849.31 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
45. cnot1 ENSDARG00000004174, ENSDARG00000109411 913.71 6849.31 CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
46. col18a1 col18a1 913.71 6849.31
47. cox6b2 ENSDARG00000037860 913.71 6849.31 cytochrome c oxidase subunit 6B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]
48. ctslb ENSDARG00000039173, ENSDARG00000074306 913.71 6849.31 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
49. cul4b ENSDARG00000060510 913.71 6849.31 cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
50. dcxr ENSDARG00000079271 913.71 6849.31 dicarbonyl/L-xylulose reductase [Source:ZFIN;Acc:ZDB-GENE-030131-7002]
51. dre-mir-26a-2 ENSDARG00000086601 913.71 6849.31 dre-mir-26a-2 [Source:miRBase;Acc:MI0001925]
52. eef1a1l1 ENSDARG00000020850 913.71 6849.31 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
53. eif1b ENSDARG00000012688 913.71 6849.31 eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
54. eif2s3 ENSDARG00000008292 913.71 6849.31 eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
55. fahd2a ENSDARG00000103759 913.71 6849.31 fumarylacetoacetate hydrolase domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-040426-2499]
56. fermt2 ENSDARG00000020242 913.71 6849.31 fermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
57. fetub ENSDARG00000053973 913.71 6849.31 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
58. gap43 ENSDARG00000099744 913.71 6849.31 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
59. hbae1_1 913.71 6849.31 hemoglobin, alpha embryonic 1
60. herpud2 ENSDARG00000021033 913.71 6849.31 HERPUD family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-868]
61. hmga1a ENSDARG00000028335 913.71 6849.31 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
62. hmgb1b ENSDARG00000030479 913.71 6849.31 high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
63. hnrnpab hnrnpab 913.71 6849.31
64. hsp90ab1 ENSDARG00000029150 913.71 6849.31 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
65. idh3g ENSDARG00000023648 913.71 6849.31 isocitrate dehydrogenase 3 (NAD+) gamma [Source:ZFIN;Acc:ZDB-GENE-050417-435]
66. map3k1 ENSDARG00000098405 913.71 6849.31 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-090313-412]
67. mcm2 ENSDARG00000102798 913.71 6849.31 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
68. mertk mertk 913.71 6849.31
69. mpi ENSDARG00000030786 913.71 6849.31 mannose phosphate isomerase [Source:ZFIN;Acc:ZDB-GENE-050904-6]
70. mt-co2 ENSDARG00000063908 913.71 6849.31 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
71. mt-co3 ENSDARG00000063912 913.71 6849.31 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
72. mt-nd1 ENSDARG00000063895 913.71 6849.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
73. mt-nd2 ENSDARG00000063899 913.71 6849.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
74. mt-nd3 ENSDARG00000063914 913.71 6849.31 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
75. myl1 ENSDARG00000014196 913.71 6849.31 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
76. myl12.1 ENSDARG00000099766 913.71 6849.31 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
77. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 913.71 6849.31 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
78. myom1a ENSDARG00000061249 913.71 6849.31 myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
79. nkrf ENSDARG00000100536 913.71 6849.31 NFKB repressing factor [Source:ZFIN;Acc:ZDB-GENE-030616-73]
80. nme2b.2 ENSDARG00000099420 913.71 6849.31 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
81. pbx4 ENSDARG00000052150 913.71 6849.31 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
82. pcmt ENSDARG00000015201 913.71 6849.31 protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-990415-134]
83. pcna ENSDARG00000054155 913.71 6849.31 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
84. pdap1a ENSDARG00000092546, ENSDARG00000116115 913.71 6849.31 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
85. pnpla7a ENSDARG00000062986 913.71 6849.31 patatin-like phospholipase domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-070112-1812]
86. ppp6c ENSDARG00000002949 913.71 6849.31 protein phosphatase 6, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-949]
87. prpf40a ENSDARG00000058467 913.71 6849.31 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
88. pvalb2 ENSDARG00000002768, ENSDARG00000114085 913.71 6849.31 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
89. pycr1 pycr1 913.71 6849.31
90. rbm4.3 ENSDARG00000022129 913.71 6849.31 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
91. rerea ENSDARG00000077353 913.71 6849.31 arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
92. rhoae rhoae 913.71 6849.31
93. rpl13 ENSDARG00000099380 913.71 6849.31 ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-031007-1]
94. rpl24 ENSDARG00000099104 913.71 6849.31 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
95. rpl31 ENSDARG00000053365 913.71 6849.31 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
96. rpl36 ENSDARG00000100588 913.71 6849.31 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
97. rpl36a ENSDARG00000058105, ENSDARG00000112656 913.71 6849.31 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
98. rpl5a ENSDARG00000020197 913.71 6849.31 ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
99. rps9 ENSDARG00000011405, ENSDARG00000113248 913.71 6849.31 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
100. serbp1a ENSDARG00000074242 913.71 6849.31 SERPINE1 mRNA binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7389]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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