Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s5.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9982.49 74829.86
2. BX511252.1 BX511252.1 5445.00 40816.33
3. cirbp cirbp 3630.00 27210.89
4. eef1a1l1 ENSDARG00000020850 3630.00 27210.89 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
5. CABZ01111496.1 ENSDARG00000003041 2722.50 20408.16 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
6. mt-co2 ENSDARG00000063908 2722.50 20408.16 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. CR383676.3 CR383676.3 1815.00 13605.44
8. actb1 ENSDARG00000037746, ENSDARG00000113649 1815.00 13605.44 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
9. cltca ENSDARG00000043493, ENSDARG00000115370 1815.00 13605.44 clathrin, heavy chain a (Hc) [Source:ZFIN;Acc:ZDB-GENE-030131-2299]
10. cox4i1 ENSDARG00000032970 1815.00 13605.44 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
11. dennd5a ENSDARG00000017006 1815.00 13605.44 DENN/MADD domain containing 5A [Source:ZFIN;Acc:ZDB-GENE-071211-1]
12. eef2b ENSDARG00000100371, ENSDARG00000109247 1815.00 13605.44 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
13. hnrnpab hnrnpab 1815.00 13605.44
14. krt4 ENSDARG00000017624, ENSDARG00000115790 1815.00 13605.44 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
15. mt-nd1 ENSDARG00000063895 1815.00 13605.44 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. mt-nd4 ENSDARG00000063917 1815.00 13605.44 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. ube2g1b ENSDARG00000069527 1815.00 13605.44 ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2939]
18. AL954137.2 ENSDARG00000114408 907.50 6802.72
19. CABZ01034848.1 CABZ01034848.1 907.50 6802.72
20. CR352225.2 CR352225.2 907.50 6802.72
21. DNAJA4 ENSDARG00000051762 907.50 6802.72 DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
22. PVRL4 907.50 6802.72 poliovirus receptor-related 4
23. RPL29 ENSDARG00000077717 907.50 6802.72 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
24. acta1b ENSDARG00000055618 907.50 6802.72 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
25. actb2 ENSDARG00000037870 907.50 6802.72 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
26. adpgk2 ENSDARG00000062785 907.50 6802.72 ADP-dependent glucokinase 2 [Source:ZFIN;Acc:ZDB-GENE-090609-3]
27. aldoaa ENSDARG00000011665 907.50 6802.72 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
28. alyref ENSDARG00000077732 907.50 6802.72 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
29. ammecr1 ENSDARG00000012892 907.50 6802.72 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
30. apoa2 ENSDARG00000015866 907.50 6802.72 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
31. apoa4 apoa4 907.50 6802.72
32. apoc1l apoc1l 907.50 6802.72
33. arhgap1 ENSDARG00000024324 907.50 6802.72 Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
34. arnt2 ENSDARG00000103697 907.50 6802.72 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
35. atf4b1 atf4b1 907.50 6802.72
36. atp5h 907.50 6802.72 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, transcript variant X1
37. ca6 ENSDARG00000056499, ENSDARG00000110050 907.50 6802.72 carbonic anhydrase VI [Source:ZFIN;Acc:ZDB-GENE-030131-7091]
38. cfl1 ENSDARG00000021124 907.50 6802.72 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
39. ckma ENSDARG00000035327, ENSDARG00000114671 907.50 6802.72 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
40. cycsb ENSDARG00000044562 907.50 6802.72 cytochrome c, somatic b [Source:ZFIN;Acc:ZDB-GENE-040625-38]
41. dsg2 dsg2 907.50 6802.72
42. eif3i ENSDARG00000017445 907.50 6802.72 eukaryotic translation initiation factor 3, subunit I [Source:ZFIN;Acc:ZDB-GENE-040426-1922]
43. eif4g2b ENSDARG00000057167 907.50 6802.72 eukaryotic translation initiation factor 4, gamma 2b [Source:ZFIN;Acc:ZDB-GENE-030131-6550]
44. gamt ENSDARG00000070844, ENSDARG00000109945 907.50 6802.72 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
45. gatad1 ENSDARG00000027612 907.50 6802.72 GATA zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050629-1]
46. gcc1 ENSDARG00000045541 907.50 6802.72 GRIP and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-118]
47. gmps ENSDARG00000079848 907.50 6802.72 guanine monophosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1503]
48. gna11b ENSDARG00000053326 907.50 6802.72 guanine nucleotide binding protein (G protein), alpha 11b (Gq class) [Source:ZFIN;Acc:ZDB-GENE-041121-9]
49. grina grina 907.50 6802.72
50. hmga2 ENSDARG00000069912 907.50 6802.72 high mobility group AT-hook 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3148]
51. hmgb1a ENSDARG00000099175, ENSDARG00000114353 907.50 6802.72 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
52. hmgn2 ENSDARG00000099572 907.50 6802.72 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
53. hmp19 907.50 6802.72 HMP19 protein
54. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 907.50 6802.72 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
55. kcnma1a ENSDARG00000079840 907.50 6802.72 potassium large conductance calcium-activated channel, subfamily M, alpha member 1a [Source:ZFIN;Acc:ZDB-GENE-070202-9]
56. krt5 ENSDARG00000058371, ENSDARG00000112017 907.50 6802.72 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
57. lasp1 ENSDARG00000057867 907.50 6802.72 LIM and SH3 protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1936]
58. lrp5 ENSDARG00000006921 907.50 6802.72 low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
59. map2 ENSDARG00000055052 907.50 6802.72 microtubule-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-041010-118]
60. mat2aa ENSDARG00000040334 907.50 6802.72 methionine adenosyltransferase II, alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-2049]
61. med31 ENSDARG00000008020 907.50 6802.72 mediator complex subunit 31 [Source:ZFIN;Acc:ZDB-GENE-040718-114]
62. mt-co1 ENSDARG00000063905 907.50 6802.72 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
63. mt-co3 ENSDARG00000063912 907.50 6802.72 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
64. mt-nd2 ENSDARG00000063899 907.50 6802.72 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
65. mthfd1l ENSDARG00000042221, ENSDARG00000110473 907.50 6802.72 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
66. naca ENSDARG00000005513 907.50 6802.72 nascent polypeptide associated complex subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020423-4]
67. nme2b.2 ENSDARG00000099420 907.50 6802.72 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
68. nop56 ENSDARG00000012820 907.50 6802.72 NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
69. npm1a ENSDARG00000014329, ENSDARG00000113199 907.50 6802.72 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
70. parp1 ENSDARG00000019529 907.50 6802.72 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
71. patl1 ENSDARG00000017423 907.50 6802.72 protein associated with topoisomerase II homolog 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-070209-83]
72. pim1 ENSDARG00000100020 907.50 6802.72 Pim-1 proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-061013-139]
73. pmp22b ENSDARG00000060457 907.50 6802.72 peripheral myelin protein 22b [Source:ZFIN;Acc:ZDB-GENE-060421-4337]
74. ppiaa ENSDARG00000009212 907.50 6802.72 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
75. ppp1caa ENSDARG00000003486, ENSDARG00000115977 907.50 6802.72 protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
76. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 907.50 6802.72 proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
77. ptmaa ENSDARG00000021113, ENSDARG00000110479 907.50 6802.72 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
78. ptmab ENSDARG00000101766 907.50 6802.72 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
79. rab2a ENSDARG00000020261 907.50 6802.72 RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
80. rbpjb ENSDARG00000052091 907.50 6802.72 recombination signal binding protein for immunoglobulin kappa J region b [Source:ZFIN;Acc:ZDB-GENE-070319-1]
81. rpl18a ENSDARG00000025073 907.50 6802.72 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
82. rpl21 ENSDARG00000010516, ENSDARG00000110263 907.50 6802.72 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
83. rpl22 ENSDARG00000070437 907.50 6802.72 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
84. rpl26 ENSDARG00000102317 907.50 6802.72 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
85. rpl34 ENSDARG00000029500 907.50 6802.72 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
86. rpl39 ENSDARG00000036316, ENSDARG00000117167 907.50 6802.72 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
87. rpl8 ENSDARG00000014867 907.50 6802.72 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
88. rplp2l ENSDARG00000011201 907.50 6802.72 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
89. rps13 ENSDARG00000036298, ENSDARG00000112818 907.50 6802.72 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
90. rps19 ENSDARG00000030602 907.50 6802.72 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
91. rps2 ENSDARG00000077291 907.50 6802.72 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
92. rps27a ENSDARG00000032725, ENSDARG00000114059 907.50 6802.72 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
93. rps6 ENSDARG00000019778 907.50 6802.72 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. si:ch73-41e3.7 ENSDARG00000089799 907.50 6802.72 si:ch73-41e3.7 [Source:ZFIN;Acc:ZDB-GENE-090313-163]
95. si:dkey-151g10.6 si:dkey-151g10.6 907.50 6802.72
96. si:dkey-6n6.2 ENSDARG00000058032 907.50 6802.72 si:dkey-6n6.2 [Source:ZFIN;Acc:ZDB-GENE-060503-173]
97. si:dkeyp-44a8.2 ENSDARG00000092493 907.50 6802.72 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
98. snrnp70 ENSDARG00000077126 907.50 6802.72 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
99. sox3 ENSDARG00000053569 907.50 6802.72 SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
100. ssbp3b ENSDARG00000030155 907.50 6802.72 single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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