Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s48.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5883.72 44108.09
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3450.64 25868.18 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2517.53 18873.00 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 1953.93 14647.90 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-nd2 ENSDARG00000063899 1780.95 13351.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1409.82 10568.90 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mt-co2 ENSDARG00000063908 1396.82 10471.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mt-nd4 ENSDARG00000063917 1378.96 10337.56 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. tmsb4x ENSDARG00000077777 1121.52 8407.62 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. mt-atp6 ENSDARG00000063911 1111.77 8334.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. actc1b ENSDARG00000099197 1110.96 8328.46 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. mt-co3 ENSDARG00000063912 988.33 7409.15 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. atp2a1 ENSDARG00000020574 975.34 7311.77 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mylz3 ENSDARG00000017441 974.53 7305.69 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 894.13 6702.96 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. eef1a1l1 ENSDARG00000020850 890.88 6678.60 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mt-nd1 ENSDARG00000063895 868.95 6514.20 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. actb2 ENSDARG00000037870 846.22 6343.80 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. si:dkey-151g10.6 si:dkey-151g10.6 821.85 6161.11
20. tnnc2 ENSDARG00000070835, ENSDARG00000111155 740.64 5552.31 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
21. myhz1.3 ENSDARG00000067997 713.84 5351.40 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
22. mt-cyb ENSDARG00000063924 678.11 5083.54 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. apoa1b ENSDARG00000101324 655.37 4913.07 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. ppiaa ENSDARG00000009212 649.69 4870.49 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. apoc1l apoc1l 623.70 4675.65
26. actb1 ENSDARG00000037746, ENSDARG00000113649 570.10 4273.83 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. acta1b ENSDARG00000055618 569.29 4267.76 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
28. hmga1a ENSDARG00000028335 553.04 4145.94 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
29. apobb apobb 534.37 4005.98
30. zgc:161979_1 zgc:161979_1 522.18 3914.59
31. eef2b ENSDARG00000100371, ENSDARG00000109247 520.56 3902.45 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. zgc:161979 zgc:161979 518.94 3890.30
33. apoeb ENSDARG00000040295 502.69 3768.48 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
34. zgc:112425 zgc:112425 501.88 3762.41
35. zgc:66286 zgc:66286 501.88 3762.41
36. myl1 ENSDARG00000014196 484.83 3634.59 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
37. apoa2 ENSDARG00000015866 442.60 3318.01 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
38. rpl23 ENSDARG00000053457 432.04 3238.85 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. pvalb2 ENSDARG00000002768, ENSDARG00000114085 414.99 3111.03 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 412.55 3092.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. aldoab ENSDARG00000034470 408.49 3062.30 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 397.93 2983.14 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. rpl18a ENSDARG00000025073 392.25 2940.55 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
44. rpl8 ENSDARG00000014867 384.13 2879.68 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. rps27a ENSDARG00000032725, ENSDARG00000114059 375.19 2812.66 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
46. tnnt3a ENSDARG00000030270 370.32 2776.15 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
47. rpl21 ENSDARG00000010516, ENSDARG00000110263 357.33 2678.77 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
48. mt-co1 ENSDARG00000063905 351.64 2636.12 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
49. si:ch211-226o13.2 345.15 2587.46 si:ch211-226o13.2
50. zgc:92533 zgc:92533 344.33 2581.32
51. rpl36a ENSDARG00000058105, ENSDARG00000112656 334.59 2508.30 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
52. tpm3 ENSDARG00000005162 332.96 2496.08 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
53. acta1a ENSDARG00000036371 328.90 2465.64 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. rpl26 ENSDARG00000102317 322.41 2416.99 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
55. rpl10a ENSDARG00000042905, ENSDARG00000115649 321.59 2410.84 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
56. rps26l ENSDARG00000030408 316.72 2374.33 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
57. eif5a ENSDARG00000017235 315.91 2368.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. tnni2a.4 ENSDARG00000029069 313.47 2349.97 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
59. rplp1 ENSDARG00000021864 309.41 2319.53 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. myl10 ENSDARG00000062592 308.60 2313.46 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
61. fabp3 ENSDARG00000023290 306.16 2295.17 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
62. ttna ttna 298.86 2240.44
63. tnni2b.1 ENSDARG00000035958 292.36 2191.72 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
64. rpl19 ENSDARG00000013307 287.49 2155.21 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. cyt1l ENSDARG00000036832 286.67 2149.06 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
66. rps23 ENSDARG00000021838 285.05 2136.92 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 274.49 2057.75 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. ptmab ENSDARG00000101766 268.81 2015.17 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
69. rps12 ENSDARG00000036875, ENSDARG00000115157 268.81 2015.17 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
70. rpl11 ENSDARG00000043509 268.00 2009.10 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. ATP5B 261.50 1960.37 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. rps2 ENSDARG00000077291 260.69 1954.30 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. rps20 ENSDARG00000036044 259.87 1948.15 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. rpl18 ENSDARG00000029533 257.44 1929.93 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
75. myhz2 ENSDARG00000012944 256.63 1923.86 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
76. rpl7 ENSDARG00000007320 250.94 1881.21 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
77. rpl36 ENSDARG00000100588 250.13 1875.13 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
78. rps9 ENSDARG00000011405, ENSDARG00000113248 246.07 1844.70 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
79. rps15 ENSDARG00000070849, ENSDARG00000110979 242.01 1814.26 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
80. zgc:153129 zgc:153129 239.57 1795.97
81. rpl27 ENSDARG00000015128 238.76 1789.90 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. rps14 ENSDARG00000036629 237.95 1783.82 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
83. rps5 ENSDARG00000043453 233.89 1753.39 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
84. rplp0 ENSDARG00000051783 229.83 1722.95 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
85. zgc:113413 zgc:113413 229.83 1722.95
86. fkbp1aa ENSDARG00000022684 226.58 1698.59 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
87. RPL29 ENSDARG00000077717 222.52 1668.15 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
88. rpl5b ENSDARG00000015862, ENSDARG00000109661 222.52 1668.15 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
89. rpl15 ENSDARG00000009285 212.77 1595.06 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
90. gapdh ENSDARG00000043457 211.96 1588.99 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
91. rps27.1 ENSDARG00000023298 210.34 1576.84 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
92. atp5g3b 208.71 1564.62 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. cfl1l ENSDARG00000012972 208.71 1564.62 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
94. hsp90aa1.1 ENSDARG00000010478 207.90 1558.55 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
95. apoa1a ENSDARG00000012076, ENSDARG00000110395 207.09 1552.48 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
96. rbfox1l ENSDARG00000021184, ENSDARG00000111700 206.28 1546.41 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
97. smyhc1 ENSDARG00000099959, ENSDARG00000115916 204.65 1534.19 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
98. apoa4 apoa4 200.59 1503.75
99. rpsa ENSDARG00000019181 200.59 1503.75 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
100. fabp2 ENSDARG00000006427, ENSDARG00000110230 198.15 1485.46 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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