Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s44.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 7077.37 53055.96
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3388.72 25403.76 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2426.97 18193.94 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2193.10 16440.72 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-nd2 ENSDARG00000063899 1952.49 14636.97 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-co2 ENSDARG00000063908 1908.68 14308.54 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 1886.44 14141.82 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mt-atp6 ENSDARG00000063911 1380.29 10347.43 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1370.86 10276.74 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. atp2a1 ENSDARG00000020574 1134.97 8508.38 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. tmsb4x ENSDARG00000077777 1109.36 8316.39 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. mt-co3 ENSDARG00000063912 1064.20 7977.84 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. actc1b ENSDARG00000099197 1028.48 7710.07 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. mt-nd1 ENSDARG00000063895 1011.63 7583.75 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 991.41 7432.17 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 967.15 7250.30 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. eef1a1l1 ENSDARG00000020850 887.62 6654.10 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. mylz3 ENSDARG00000017441 860.66 6451.99 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. si:dkey-151g10.6 si:dkey-151g10.6 858.64 6436.85
20. myhz1.3 ENSDARG00000067997 834.38 6254.98 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. mt-cyb ENSDARG00000063924 744.06 5577.89 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. pvalb2 ENSDARG00000002768, ENSDARG00000114085 646.34 4845.33 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
23. apoa1b ENSDARG00000101324 600.51 4501.76 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. ppiaa ENSDARG00000009212 599.16 4491.64 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. rpl23 ENSDARG00000053457 599.16 4491.64 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. actb2 ENSDARG00000037870 589.05 4415.85 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
27. acta1b ENSDARG00000055618 576.92 4324.92 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
28. myl1 ENSDARG00000014196 512.22 3839.89 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
29. apoc1l apoc1l 504.13 3779.24
30. apoa2 ENSDARG00000015866 492.67 3693.33 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 479.19 3592.28 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. zgc:161979 zgc:161979 479.19 3592.28
33. actb1 ENSDARG00000037746, ENSDARG00000113649 478.52 3587.26 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. zgc:161979_1 zgc:161979_1 463.02 3471.06
35. tnnt3a ENSDARG00000030270 462.34 3465.96 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
36. zgc:66286 zgc:66286 452.91 3395.27
37. apobb apobb 450.89 3380.13
38. aldoab ENSDARG00000034470 446.17 3344.74 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. apoeb ENSDARG00000040295 431.34 3233.57 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
40. hmga1a ENSDARG00000028335 427.97 3208.30 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
41. zgc:112425 zgc:112425 422.58 3167.90
42. acta1a ENSDARG00000036371 420.56 3152.76 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 411.12 3081.99 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. rpl8 ENSDARG00000014867 411.12 3081.99 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. si:ch211-226o13.2 403.71 3026.44 si:ch211-226o13.2
46. ttna ttna 386.19 2895.10
47. tnni2a.4 ENSDARG00000029069 373.38 2799.07 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
48. rps23 ENSDARG00000021838 372.71 2794.04 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 370.68 2778.83 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. tnni2b.1 ENSDARG00000035958 368.66 2763.68 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
51. rps27a ENSDARG00000032725, ENSDARG00000114059 367.99 2758.66 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
52. rps26l ENSDARG00000030408 363.94 2728.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. hspa8 ENSDARG00000068992, ENSDARG00000114726 357.20 2677.77 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
54. rpl21 ENSDARG00000010516, ENSDARG00000110263 357.20 2677.77 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 351.81 2637.37 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. zgc:92533 zgc:92533 347.77 2607.08
57. rplp1 ENSDARG00000021864 344.40 2581.82 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
58. myl10 ENSDARG00000062592 343.73 2576.79 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
59. rpl26 ENSDARG00000102317 337.66 2531.29 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
60. rps20 ENSDARG00000036044 332.27 2490.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
61. mt-co1 ENSDARG00000063905 326.20 2445.38 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
62. rpl9 ENSDARG00000037350, ENSDARG00000112384 322.83 2420.12 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
63. rps14 ENSDARG00000036629 314.07 2354.45 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
64. rpl18a ENSDARG00000025073 308.00 2308.94 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
65. tpm3 ENSDARG00000005162 303.29 2273.63 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
66. rpl19 ENSDARG00000013307 294.53 2207.96 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rpl36 ENSDARG00000100588 293.85 2202.87 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
68. rpl27 ENSDARG00000015128 281.05 2106.91 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
69. cyt1l ENSDARG00000036832 271.61 2036.14 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
70. eif5a ENSDARG00000017235 262.85 1970.47 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
71. zgc:113413 zgc:113413 257.46 1930.07
72. rps15 ENSDARG00000070849, ENSDARG00000110979 256.11 1919.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. zgc:153129 zgc:153129 250.72 1879.54
74. tnnt3b ENSDARG00000068457 248.70 1864.40 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
75. rps12 ENSDARG00000036875, ENSDARG00000115157 239.93 1798.65 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
76. ttnb ttnb 237.91 1783.51
77. faua ENSDARG00000099022 237.24 1778.48 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
78. fabp3 ENSDARG00000023290 229.82 1722.86 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 229.15 1717.84 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. atp5g3b 225.78 1692.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
81. rpl11 ENSDARG00000043509 224.43 1682.45 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
82. gapdh ENSDARG00000043457 223.76 1677.43 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
83. ptmab ENSDARG00000101766 223.76 1677.43 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
84. rpl18 ENSDARG00000029533 223.08 1672.33 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. rps15a ENSDARG00000010160 223.08 1672.33 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
86. rps29 ENSDARG00000041232 223.08 1672.33 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
87. rplp2 ENSDARG00000101406 222.41 1667.31 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. rplp0 ENSDARG00000051783 221.06 1657.19 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. RPL29 ENSDARG00000077717 219.71 1647.07 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. rps10 ENSDARG00000034897 218.37 1637.02 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
91. rpl15 ENSDARG00000009285 215.67 1616.78 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
92. rpl7 ENSDARG00000007320 212.30 1591.52 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
93. cfl1l ENSDARG00000012972 209.60 1571.28 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
94. rps4x ENSDARG00000014690 208.93 1566.26 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
95. mylpfb ENSDARG00000002589 208.26 1561.23 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
96. rps19 ENSDARG00000030602 207.58 1556.14 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 206.91 1551.11 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. rplp2l ENSDARG00000011201 206.91 1551.11 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
99. rps2 ENSDARG00000077291 206.91 1551.11 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
100. rps27.1 ENSDARG00000023298 205.56 1540.99 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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