Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s41.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5380.98 40340.50
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3373.59 25291.36 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2855.04 21403.86 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2202.91 16514.93 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 2159.19 16187.17 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd2 ENSDARG00000063899 1951.53 14630.37 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-atp6 ENSDARG00000063911 1552.00 11635.14 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-nd4 ENSDARG00000063917 1475.49 11061.56 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1436.63 10770.23 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. mt-co3 ENSDARG00000063912 1395.34 10460.68 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. tmsb4x ENSDARG00000077777 1305.47 9786.94 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1040.74 7802.29 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. mylz3 ENSDARG00000017441 1040.74 7802.29 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. actc1b ENSDARG00000099197 971.52 7283.36 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. mt-nd1 ENSDARG00000063895 959.37 7192.27 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. pvalb2 ENSDARG00000002768, ENSDARG00000114085 946.01 7092.11 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
17. atp2a1 ENSDARG00000020574 910.80 6828.15 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
18. myhz1.3 ENSDARG00000067997 870.72 6527.67 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. si:dkey-151g10.6 si:dkey-151g10.6 863.43 6473.02
20. tnnc2 ENSDARG00000070835, ENSDARG00000111155 857.36 6427.52 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
21. mt-cyb ENSDARG00000063924 734.71 5508.02 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. eef1a1l1 ENSDARG00000020850 680.06 5098.32 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
23. ppiaa ENSDARG00000009212 675.20 5061.89 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
24. actb2 ENSDARG00000037870 650.92 4879.86 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
25. acta1b ENSDARG00000055618 595.05 4461.01 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
26. apoa1b ENSDARG00000101324 582.91 4370.00 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. zgc:161979 zgc:161979 530.69 3978.51
28. zgc:161979_1 zgc:161979_1 520.97 3905.64
29. actb1 ENSDARG00000037746, ENSDARG00000113649 508.83 3814.63 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. aldoab ENSDARG00000034470 491.83 3687.19 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
31. hmga1a ENSDARG00000028335 479.69 3596.17 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. apobb apobb 465.11 3486.87
33. apoa2 ENSDARG00000015866 461.47 3459.58 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
34. zgc:112425 zgc:112425 455.40 3414.07
35. zgc:66286 zgc:66286 451.75 3386.71
36. myl1 ENSDARG00000014196 445.68 3341.20 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
37. si:ch211-226o13.2 442.04 3313.92 si:ch211-226o13.2
38. apoc1l apoc1l 429.90 3222.90
39. apoeb ENSDARG00000040295 427.47 3204.69 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
40. rpl8 ENSDARG00000014867 420.18 3150.03 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
41. tnnt3a ENSDARG00000030270 418.97 3140.96 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
42. eef2b ENSDARG00000100371, ENSDARG00000109247 416.54 3122.75 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 415.32 3113.60 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. ttna ttna 392.25 2940.65
45. rpl23 ENSDARG00000053457 377.68 2831.42 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. hspa8 ENSDARG00000068992, ENSDARG00000114726 374.03 2804.05 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
47. acta1a ENSDARG00000036371 370.39 2776.77 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
48. tnni2a.4 ENSDARG00000029069 369.18 2767.69 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
49. rpl36a ENSDARG00000058105, ENSDARG00000112656 361.89 2713.04 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
50. rpl10a ENSDARG00000042905, ENSDARG00000115649 355.82 2667.54 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
51. rps23 ENSDARG00000021838 353.39 2649.32 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
52. rpl18a ENSDARG00000025073 348.53 2612.88 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 347.32 2603.81 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. rplp1 ENSDARG00000021864 344.89 2585.60 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. mt-co1 ENSDARG00000063905 340.03 2549.16 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
56. rps20 ENSDARG00000036044 340.03 2549.16 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
57. pvalb1 ENSDARG00000037789 335.17 2512.73 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
58. rps26l ENSDARG00000030408 333.96 2503.65 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
59. tnni2b.1 ENSDARG00000035958 333.96 2503.65 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
60. tnnt3b ENSDARG00000068457 330.32 2476.37 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
61. rpl26 ENSDARG00000102317 329.10 2467.22 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. tpm3 ENSDARG00000005162 329.10 2467.22 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
63. myl10 ENSDARG00000062592 321.81 2412.57 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
64. zgc:92533 zgc:92533 318.17 2385.28
65. rpl21 ENSDARG00000010516, ENSDARG00000110263 316.96 2376.21 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
66. eif5a ENSDARG00000017235 286.60 2148.60 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
67. rpl36 ENSDARG00000100588 279.31 2093.95 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
68. rps5 ENSDARG00000043453 275.67 2066.66 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
69. rpl27 ENSDARG00000015128 269.60 2021.16 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
70. ptmab ENSDARG00000101766 262.31 1966.50 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
71. rps9 ENSDARG00000011405, ENSDARG00000113248 262.31 1966.50 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
72. rpl11 ENSDARG00000043509 257.45 1930.07 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
73. mylpfb ENSDARG00000002589 255.02 1911.85 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
74. rpl19 ENSDARG00000013307 252.59 1893.63 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
75. fabp3 ENSDARG00000023290 251.38 1884.56 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
76. rps14 ENSDARG00000036629 247.74 1857.27 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. cyt1l ENSDARG00000036832 245.31 1839.06 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
78. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 245.31 1839.06 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
79. rps15 ENSDARG00000070849, ENSDARG00000110979 241.66 1811.69 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
80. gapdh ENSDARG00000043457 236.81 1775.33 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
81. rps12 ENSDARG00000036875, ENSDARG00000115157 234.38 1757.12 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
82. rps2 ENSDARG00000077291 233.16 1747.97 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
83. zgc:113413 zgc:113413 233.16 1747.97
84. zgc:153129 zgc:153129 233.16 1747.97
85. rpsa ENSDARG00000019181 231.95 1738.90 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
86. ttnb ttnb 230.73 1729.75
87. rpl9 ENSDARG00000037350, ENSDARG00000112384 225.88 1693.39 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
88. cfl1l ENSDARG00000012972 223.45 1675.18 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
89. faua ENSDARG00000099022 218.59 1638.74 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. rpl18 ENSDARG00000029533 213.73 1602.31 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
91. cirbp cirbp 204.02 1529.51
92. tmem38a ENSDARG00000024047 204.02 1529.51 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
93. atp5g3b 202.80 1520.37 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
94. rpl15 ENSDARG00000009285 201.59 1511.29 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
95. fkbp1aa ENSDARG00000022684 200.37 1502.15 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
96. rbfox1l ENSDARG00000021184, ENSDARG00000111700 197.95 1484.01 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
97. rps19 ENSDARG00000030602 197.95 1484.01 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
98. rps27.1 ENSDARG00000023298 197.95 1484.01 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
99. rps15a ENSDARG00000010160 195.52 1465.79 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
100. rps6 ENSDARG00000019778 195.52 1465.79 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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