Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s40.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6192.50 46422.81
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3423.12 25661.82 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2970.33 22267.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2432.42 18234.92 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1851.52 13880.14 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd2 ENSDARG00000063899 1648.82 12360.57 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1467.18 10998.89 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mt-nd4 ENSDARG00000063917 1464.54 10979.10 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. tmsb4x ENSDARG00000077777 1435.59 10762.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. mt-atp6 ENSDARG00000063911 1377.67 10327.87 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. atp2a1 ENSDARG00000020574 1157.42 8676.74 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1124.07 8426.72 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. mylz3 ENSDARG00000017441 1066.16 7992.59 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. mt-co3 ENSDARG00000063912 1031.94 7736.06 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. actc1b ENSDARG00000099197 996.84 7472.93 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 967.88 7255.83 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. pvalb2 ENSDARG00000002768, ENSDARG00000114085 953.84 7150.57 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
18. myhz1.3 ENSDARG00000067997 936.29 7019.01 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mt-nd1 ENSDARG00000063895 794.13 5953.29 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. apoa1b ENSDARG00000101324 745.87 5591.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
21. apoa2 ENSDARG00000015866 714.28 5354.68 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
22. eef1a1l1 ENSDARG00000020850 713.41 5348.16 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
23. apoc1l apoc1l 659.00 4940.27
24. si:dkey-151g10.6 si:dkey-151g10.6 659.00 4940.27
25. apobb apobb 654.61 4907.36
26. actb2 ENSDARG00000037870 630.92 4729.77 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
27. mt-cyb ENSDARG00000063924 630.92 4729.77 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. acta1b ENSDARG00000055618 598.45 4486.35 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
29. zgc:161979 zgc:161979 592.31 4440.32
30. ppiaa ENSDARG00000009212 580.90 4354.79 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. myl1 ENSDARG00000014196 541.42 4058.82 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
32. zgc:161979_1 zgc:161979_1 534.40 4006.19
33. tnnt3a ENSDARG00000030270 500.17 3749.58 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
34. apoeb ENSDARG00000040295 481.75 3611.50 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
35. ttna ttna 477.36 3578.59
36. actb1 ENSDARG00000037746, ENSDARG00000113649 470.34 3525.96 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
37. aldoab ENSDARG00000034470 465.95 3493.05 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
38. si:ch211-226o13.2 465.95 3493.05 si:ch211-226o13.2
39. zgc:112425 zgc:112425 440.50 3302.26
40. zgc:66286 zgc:66286 423.83 3177.29
41. rpl23 ENSDARG00000053457 419.44 3144.38 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. tnni2a.4 ENSDARG00000029069 408.04 3058.92 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 405.40 3039.13 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 401.02 3006.29 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. hmga1a ENSDARG00000028335 386.10 2894.44 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
46. tnnt3b ENSDARG00000068457 376.45 2822.10 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
47. rps26l ENSDARG00000030408 368.55 2762.88 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 360.65 2703.66 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. rps27a ENSDARG00000032725, ENSDARG00000114059 358.90 2690.54 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
50. rpl8 ENSDARG00000014867 358.02 2683.94 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. rps23 ENSDARG00000021838 357.14 2677.34 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
52. myl10 ENSDARG00000062592 355.39 2664.22 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
53. acta1a ENSDARG00000036371 324.67 2433.93 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. rpl21 ENSDARG00000010516, ENSDARG00000110263 322.04 2414.21 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
55. btf3 ENSDARG00000035400, ENSDARG00000116462 315.02 2361.58 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
56. ttnb ttnb 314.14 2354.99
57. tpm3 ENSDARG00000005162 311.51 2335.27 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
58. zgc:92533 zgc:92533 309.76 2322.15
59. rpl18a ENSDARG00000025073 306.25 2295.84 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 295.72 2216.90 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. pvalb1 ENSDARG00000037789 293.96 2203.71 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
62. rps20 ENSDARG00000036044 286.94 2151.08 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
63. rpl26 ENSDARG00000102317 273.78 2052.42 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. rpl19 ENSDARG00000013307 269.39 2019.51 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. eif5a ENSDARG00000017235 265.00 1986.60 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. mylpfb ENSDARG00000002589 261.49 1960.29 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
67. cyt1l ENSDARG00000036832 257.98 1933.98 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
68. rpl9 ENSDARG00000037350, ENSDARG00000112384 257.11 1927.46 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
69. tnni2b.1 ENSDARG00000035958 251.84 1887.95 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
70. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 248.33 1861.64 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
71. rbp4 ENSDARG00000101199 246.58 1848.52 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
72. rps15 ENSDARG00000070849, ENSDARG00000110979 246.58 1848.52 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. rpl36 ENSDARG00000100588 243.94 1828.73 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. rplp1 ENSDARG00000021864 240.43 1802.41 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
75. zgc:153129 zgc:153129 234.29 1756.38
76. apoa1a ENSDARG00000012076, ENSDARG00000110395 232.54 1743.26 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
77. rpl27 ENSDARG00000015128 230.78 1730.07 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
78. rps14 ENSDARG00000036629 226.39 1697.16 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
79. rps2 ENSDARG00000077291 225.52 1690.64 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. col1a1b ENSDARG00000035809 222.88 1670.85 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
81. faua ENSDARG00000099022 222.88 1670.85 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
82. ptmab ENSDARG00000101766 222.01 1664.32 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
83. rpl11 ENSDARG00000043509 216.74 1624.82 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
84. mt-co1 ENSDARG00000063905 213.23 1598.50 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
85. rpl6 ENSDARG00000058451 207.97 1559.07 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
86. rps29 ENSDARG00000041232 207.97 1559.07 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
87. fabp3 ENSDARG00000023290 206.21 1545.88 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
88. rbfox1l ENSDARG00000021184, ENSDARG00000111700 203.58 1526.16 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
89. tmem38a ENSDARG00000024047 202.70 1519.56 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
90. gapdh ENSDARG00000043457 199.19 1493.25 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
91. rps15a ENSDARG00000010160 199.19 1493.25 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. col1a1a ENSDARG00000012405, ENSDARG00000116113 197.44 1480.13 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
93. atp5g3b 193.05 1447.22 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
94. ATP5B 192.17 1440.63 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
95. nme2b.2 ENSDARG00000099420 188.66 1414.31 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
96. rpl18 ENSDARG00000029533 187.78 1407.71 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
97. apoa4 apoa4 186.91 1401.19
98. pgam2 ENSDARG00000057571 186.03 1394.60 phosphoglycerate mutase 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040116-6]
99. rps5 ENSDARG00000043453 186.03 1394.60 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 185.15 1388.00 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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