Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s4.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5943.67 44554.33
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4622.85 34653.33 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. id1 ENSDARG00000040764 2641.63 19801.92 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
4. banf1 ENSDARG00000037009 1981.22 14851.42 barrier to autointegration factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6657]
5. rps15a ENSDARG00000010160 1981.22 14851.42 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
6. BX511252.1 BX511252.1 1320.82 9901.00
7. MARK4 ENSDARG00000024966 1320.82 9901.00 microtubule affinity regulating kinase 4 [Source:HGNC Symbol;Acc:HGNC:13538]
8. RPL29 ENSDARG00000077717 1320.82 9901.00 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
9. acadsb ENSDARG00000076780 1320.82 9901.00 acyl-CoA dehydrogenase short/branched chain [Source:ZFIN;Acc:ZDB-GENE-070410-109]
10. ahcy ENSDARG00000005191 1320.82 9901.00 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
11. ak2 ENSDARG00000005926 1320.82 9901.00 adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
12. apoa2 ENSDARG00000015866 1320.82 9901.00 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
13. apoc1l apoc1l 1320.82 9901.00
14. eef1a1l1 ENSDARG00000020850 1320.82 9901.00 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. eif5a2 ENSDARG00000056186 1320.82 9901.00 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
16. mt-atp6 ENSDARG00000063911 1320.82 9901.00 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. mt-co2 ENSDARG00000063908 1320.82 9901.00 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
18. mt-nd1 ENSDARG00000063895 1320.82 9901.00 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. rpl18a ENSDARG00000025073 1320.82 9901.00 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
20. rpl21 ENSDARG00000010516, ENSDARG00000110263 1320.82 9901.00 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
21. rpl8 ENSDARG00000014867 1320.82 9901.00 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
22. sepp1a 1320.82 9901.00 selenoprotein P, plasma, 1a
23. ssr2 ENSDARG00000005230 1320.82 9901.00 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
24. yme1l1a ENSDARG00000075192 1320.82 9901.00 YME1-like 1a [Source:ZFIN;Acc:ZDB-GENE-091113-41]
25. zgc:161979 zgc:161979 1320.82 9901.00
26. ADAM22 ENSDARG00000060532 660.41 4950.50 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
27. CABZ01081490.1 ENSDARG00000111653 660.41 4950.50
28. CR382363.1 ENSDARG00000097381 660.41 4950.50
29. EEF1E1 ENSDARG00000071774 660.41 4950.50 eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
30. GUSB ENSDARG00000063126 660.41 4950.50 glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
31. HNRNPAB HNRNPAB 660.41 4950.50
32. PACS1 PACS1 660.41 4950.50
33. RTKN RTKN 660.41 4950.50
34. Sep-02 Sep-02 660.41 4950.50
35. ZNF337_6 ZNF337_6 660.41 4950.50
36. aass ENSDARG00000051816 660.41 4950.50 aminoadipate-semialdehyde synthase [Source:ZFIN;Acc:ZDB-GENE-061220-8]
37. agxt2 ENSDARG00000100709 660.41 4950.50 alanine--glyoxylate aminotransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-100]
38. anxa1a ENSDARG00000026726 660.41 4950.50 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
39. apoa1b ENSDARG00000101324 660.41 4950.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
40. apoa4 apoa4 660.41 4950.50
41. apobb apobb 660.41 4950.50
42. apoeb ENSDARG00000040295 660.41 4950.50 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
43. atp2a1 ENSDARG00000020574 660.41 4950.50 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
44. atp5g3b 660.41 4950.50 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
45. atp6v1c1a ENSDARG00000023967 660.41 4950.50 ATPase H+ transporting V1 subunit C1a [Source:ZFIN;Acc:ZDB-GENE-030616-612]
46. bzw1a ENSDARG00000010481 660.41 4950.50 basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
47. camk2n1a ENSDARG00000025855 660.41 4950.50 calcium/calmodulin-dependent protein kinase II inhibitor 1a [Source:ZFIN;Acc:ZDB-GENE-050522-319]
48. cct5 ENSDARG00000045399 660.41 4950.50 chaperonin containing TCP1, subunit 5 (epsilon) [Source:ZFIN;Acc:ZDB-GENE-030131-977]
49. cdk1 ENSDARG00000087554, ENSDARG00000110840 660.41 4950.50 cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
50. cenpe ENSDARG00000063385 660.41 4950.50 centromere protein E [Source:ZFIN;Acc:ZDB-GENE-060929-860]
51. ckma ENSDARG00000035327, ENSDARG00000114671 660.41 4950.50 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
52. ckmb ENSDARG00000040565 660.41 4950.50 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
53. col8a1a ENSDARG00000077403, ENSDARG00000111174 660.41 4950.50 collagen, type VIII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070912-274]
54. comtb ENSDARG00000025679, ENSDARG00000111678 660.41 4950.50 catechol-O-methyltransferase b [Source:ZFIN;Acc:ZDB-GENE-040724-164]
55. cox6b2 ENSDARG00000037860 660.41 4950.50 cytochrome c oxidase subunit 6B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]
56. cx43.4 ENSDARG00000007099 660.41 4950.50 connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
57. dctd ENSDARG00000036990 660.41 4950.50 dCMP deaminase [Source:ZFIN;Acc:ZDB-GENE-050417-116]
58. dlg5a ENSDARG00000074059 660.41 4950.50 discs, large homolog 5a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-3149]
59. eef1g ENSDARG00000056119 660.41 4950.50 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
60. eef2b ENSDARG00000100371, ENSDARG00000109247 660.41 4950.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
61. eif3c ENSDARG00000016443 660.41 4950.50 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
62. eif4ebp2 ENSDARG00000031819 660.41 4950.50 eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
63. ell2 ENSDARG00000006251 660.41 4950.50 elongation factor, RNA polymerase II, 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1717]
64. ensab ENSDARG00000061644 660.41 4950.50 endosulfine alpha b [Source:ZFIN;Acc:ZDB-GENE-060526-294]
65. fabp3 ENSDARG00000023290 660.41 4950.50 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
66. fam96b 660.41 4950.50 family with sequence similarity 96, member B
67. fkbp9 ENSDARG00000005023 660.41 4950.50 FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
68. flot1b ENSDARG00000037998 660.41 4950.50 flotillin 1b [Source:ZFIN;Acc:ZDB-GENE-020430-2]
69. foxp4 ENSDARG00000076120 660.41 4950.50 forkhead box P4 [Source:ZFIN;Acc:ZDB-GENE-101207-1]
70. gmds ENSDARG00000026629 660.41 4950.50 GDP-mannose 4,6-dehydratase [Source:ZFIN;Acc:ZDB-GENE-050419-45]
71. gnb2l1 660.41 4950.50 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
72. gpm6aa ENSDARG00000055455, ENSDARG00000110942 660.41 4950.50 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
73. gpsm1a ENSDARG00000092517 660.41 4950.50 G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
74. gpx4a ENSDARG00000068478 660.41 4950.50 glutathione peroxidase 4a [Source:ZFIN;Acc:ZDB-GENE-030410-2]
75. h3f3a 660.41 4950.50 H3 histone, family 3A, transcript variant X1
76. hbae3 ENSDARG00000079305 660.41 4950.50 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
77. hbbe1.1 ENSDARG00000113599 660.41 4950.50 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
78. hirip3 ENSDARG00000027749, ENSDARG00000115688 660.41 4950.50 HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
79. hmga1a ENSDARG00000028335 660.41 4950.50 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
80. hnrnpa0a ENSDARG00000089302 660.41 4950.50 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
81. hsp90ab1 ENSDARG00000029150 660.41 4950.50 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
82. hspa8 ENSDARG00000068992, ENSDARG00000114726 660.41 4950.50 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
83. ing5b ENSDARG00000068175 660.41 4950.50 inhibitor of growth family, member 5b [Source:ZFIN;Acc:ZDB-GENE-030616-462]
84. inppl1a ENSDARG00000104222 660.41 4950.50 inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
85. itgav ENSDARG00000006314 660.41 4950.50 integrin, alpha V [Source:ZFIN;Acc:ZDB-GENE-060616-382]
86. kctd10 ENSDARG00000017115 660.41 4950.50 potassium channel tetramerization domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-2843]
87. kdm2aa ENSDARG00000059653 660.41 4950.50 lysine (K)-specific demethylase 2Aa [Source:ZFIN;Acc:ZDB-GENE-061215-144]
88. khdrbs1a ENSDARG00000052856 660.41 4950.50 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
89. kif11 ENSDARG00000010948 660.41 4950.50 kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
90. marcksl1a ENSDARG00000039034 660.41 4950.50 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
91. mir203a 660.41 4950.50 microRNA 203a
92. mt-cyb ENSDARG00000063924 660.41 4950.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
93. mt-nd4 ENSDARG00000063917 660.41 4950.50 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
94. mthfd1l ENSDARG00000042221, ENSDARG00000110473 660.41 4950.50 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
95. mylz3 ENSDARG00000017441 660.41 4950.50 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
96. ndrg3a ENSDARG00000013087 660.41 4950.50 ndrg family member 3a [Source:ZFIN;Acc:ZDB-GENE-980526-124]
97. ndufab1b ENSDARG00000014915 660.41 4950.50 NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
98. ndufb10 ENSDARG00000028889 660.41 4950.50 NADH:ubiquinone oxidoreductase subunit B10 [Source:ZFIN;Acc:ZDB-GENE-040426-1691]
99. ndufs2 ENSDARG00000007526 660.41 4950.50 NADH:ubiquinone oxidoreductase core subunit S2 [Source:ZFIN;Acc:ZDB-GENE-050522-273]
100. nipblb ENSDARG00000061052 660.41 4950.50 nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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