Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s39.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10501.34 78721.27
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3055.93 22908.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2837.14 21268.07 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2034.52 15251.39 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1606.26 12041.02 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1544.04 11574.60 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mt-nd2 ENSDARG00000063899 1540.93 11551.28 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. tmsb4x ENSDARG00000077777 1384.35 10377.51 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. mt-atp6 ENSDARG00000063911 1221.54 9157.04 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actc1b ENSDARG00000099197 1168.66 8760.63 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. mylz3 ENSDARG00000017441 1100.22 8247.59 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1084.66 8130.94 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
13. mt-co3 ENSDARG00000063912 1054.59 7905.53 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1040.08 7796.76 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. atp2a1 ENSDARG00000020574 1022.45 7664.60 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. mt-nd4 ENSDARG00000063917 983.04 7369.17 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. si:dkey-151g10.6 si:dkey-151g10.6 939.49 7042.71
18. mt-nd1 ENSDARG00000063895 824.39 6179.88 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. eef1a1l1 ENSDARG00000020850 792.24 5938.87 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. actb2 ENSDARG00000037870 746.61 5596.82 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. tnnc2 ENSDARG00000070835, ENSDARG00000111155 746.61 5596.82 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
22. myhz1.3 ENSDARG00000067997 714.47 5355.89 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. zgc:161979_1 zgc:161979_1 688.54 5161.51
24. apoa1b ENSDARG00000101324 634.62 4757.31 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
25. acta1b ENSDARG00000055618 597.29 4477.47 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
26. ppiaa ENSDARG00000009212 595.22 4461.95 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. mt-cyb ENSDARG00000063924 537.15 4026.64 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. apoc1l apoc1l 530.93 3980.01
29. zgc:161979 zgc:161979 500.85 3754.53
30. hmga1a ENSDARG00000028335 479.08 3591.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. aldoab ENSDARG00000034470 478.04 3583.53 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
32. zgc:112425 zgc:112425 478.04 3583.53
33. actb1 ENSDARG00000037746, ENSDARG00000113649 471.82 3536.91 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. btf3 ENSDARG00000035400, ENSDARG00000116462 463.52 3474.69 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. rpl23 ENSDARG00000053457 453.15 3396.95 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
36. apoa2 ENSDARG00000015866 449.01 3365.92 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
37. rpl8 ENSDARG00000014867 442.78 3319.21 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
38. zgc:66286 zgc:66286 423.08 3171.54
39. apobb apobb 411.67 3086.00
40. myl1 ENSDARG00000014196 409.60 3070.49 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
41. tnnt3a ENSDARG00000030270 404.42 3031.66 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
42. eef2b ENSDARG00000100371, ENSDARG00000109247 396.12 2969.44 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
43. hspa8 ENSDARG00000068992, ENSDARG00000114726 395.08 2961.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 384.71 2883.90 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. tnni2a.4 ENSDARG00000029069 380.57 2852.87 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
46. apoeb ENSDARG00000040295 377.46 2829.56 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
47. rpl18a ENSDARG00000025073 369.16 2767.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 361.90 2712.91 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. acta1a ENSDARG00000036371 359.83 2697.40 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
50. rps23 ENSDARG00000021838 357.75 2681.80 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
51. rps26l ENSDARG00000030408 332.87 2495.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
52. rps20 ENSDARG00000036044 331.83 2487.50 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
53. ttna ttna 330.79 2479.70
54. tnnt3b ENSDARG00000068457 325.61 2440.87 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
55. pvalb1 ENSDARG00000037789 320.42 2401.97 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 317.31 2378.65 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. tpm3 ENSDARG00000005162 317.31 2378.65 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
58. rpl36a ENSDARG00000058105, ENSDARG00000112656 300.72 2254.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
59. tnni2b.1 ENSDARG00000035958 300.72 2254.29 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
60. eif5a ENSDARG00000017235 295.53 2215.38 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. myl10 ENSDARG00000062592 292.42 2192.07 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
62. rpl26 ENSDARG00000102317 289.31 2168.76 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
63. fabp3 ENSDARG00000023290 286.20 2145.44 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
64. rplp1 ENSDARG00000021864 286.20 2145.44 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
65. rps14 ENSDARG00000036629 284.13 2129.93 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
66. zgc:113413 zgc:113413 284.13 2129.93
67. si:ch211-226o13.2 283.09 2122.13 si:ch211-226o13.2
68. zgc:92533 zgc:92533 282.05 2114.33
69. rps15 ENSDARG00000070849, ENSDARG00000110979 279.98 2098.82 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
70. mt-co1 ENSDARG00000063905 261.32 1958.93 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
71. rpl27 ENSDARG00000015128 246.80 1850.09 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
72. rps9 ENSDARG00000011405, ENSDARG00000113248 239.54 1795.67 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
73. mylpfb ENSDARG00000002589 236.43 1772.35 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
74. rpl9 ENSDARG00000037350, ENSDARG00000112384 231.24 1733.45 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
75. atp5g3b 229.17 1717.93 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
76. RPL29 ENSDARG00000077717 228.13 1710.13 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
77. rps5 ENSDARG00000043453 228.13 1710.13 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
78. ptmab ENSDARG00000101766 226.06 1694.62 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
79. rpl15 ENSDARG00000009285 226.06 1694.62 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
80. rps27.1 ENSDARG00000023298 223.98 1679.02 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
81. rpsa ENSDARG00000019181 219.84 1647.99 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. cyt1l ENSDARG00000036832 218.80 1640.19 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
83. rpl36 ENSDARG00000100588 218.80 1640.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
84. gapdh ENSDARG00000043457 215.69 1616.88 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
85. rpl18 ENSDARG00000029533 215.69 1616.88 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
86. rps2 ENSDARG00000077291 212.58 1593.56 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
87. rps29 ENSDARG00000041232 212.58 1593.56 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
88. rpl11 ENSDARG00000043509 211.54 1585.77 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. rpl19 ENSDARG00000013307 211.54 1585.77 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
90. rps12 ENSDARG00000036875, ENSDARG00000115157 205.32 1539.14 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
91. apoa1a ENSDARG00000012076, ENSDARG00000110395 203.25 1523.62 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
92. rbfox1l ENSDARG00000021184, ENSDARG00000111700 201.17 1508.03 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
93. rps19 ENSDARG00000030602 201.17 1508.03 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. zgc:153129 zgc:153129 201.17 1508.03
95. COX5B_1 ENSDARG00000015978 199.10 1492.51 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
96. mt-nd3 ENSDARG00000063914 199.10 1492.51 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
97. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 197.02 1476.92 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
98. nme2b.2 ENSDARG00000099420 194.95 1461.41 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
99. cirbp cirbp 190.80 1430.30
100. tmem38a ENSDARG00000024047 190.80 1430.30 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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