Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s31.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10605.39 79506.78
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4661.85 34949.09 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 2371.00 17774.98 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. tmsb4x ENSDARG00000077777 1912.30 14336.18 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. apoc1l apoc1l 1668.25 12506.58
6. tpma ENSDARG00000033683 1639.75 12292.92 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
7. zgc:161979_1 zgc:161979_1 1610.36 12072.59
8. apobb apobb 1505.26 11284.68
9. apoa2 ENSDARG00000015866 1467.85 11004.22 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
10. mt-co2 ENSDARG00000063908 1420.64 10650.29 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. zgc:161979 zgc:161979 1358.30 10182.94
12. mt-nd2 ENSDARG00000063899 1325.34 9935.85 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. apoeb ENSDARG00000040295 1295.06 9708.84 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
14. mt-atp6 ENSDARG00000063911 1289.71 9668.73 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. mt-nd4 ENSDARG00000063917 1242.51 9314.88 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. ckmb ENSDARG00000040565 1200.64 9000.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
17. mt-co3 ENSDARG00000063912 907.61 6804.20 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb2 ENSDARG00000037870 871.09 6530.41 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. ckma ENSDARG00000035327, ENSDARG00000114671 871.09 6530.41 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
20. atp2a1 ENSDARG00000020574 832.79 6243.28 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. apoa1a ENSDARG00000012076, ENSDARG00000110395 828.34 6209.92 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
22. apoa4 apoa4 822.99 6169.81
23. pvalb2 ENSDARG00000002768, ENSDARG00000114085 790.93 5929.47 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
24. mylz3 ENSDARG00000017441 765.10 5735.82 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
25. actc1b ENSDARG00000099197 733.92 5502.07 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
26. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 708.09 5308.43 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
27. mt-cyb ENSDARG00000063924 660.00 4947.91 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. mt-nd1 ENSDARG00000063895 653.76 4901.13 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. bhmt ENSDARG00000013430 638.62 4787.62 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
30. si:dkey-151g10.6 si:dkey-151g10.6 571.82 4286.84
31. eef1a1l1 ENSDARG00000020850 565.59 4240.13 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
32. fabp2 ENSDARG00000006427, ENSDARG00000110230 517.49 3879.53 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
33. tnnc2 ENSDARG00000070835, ENSDARG00000111155 512.14 3839.43 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
34. actb1 ENSDARG00000037746, ENSDARG00000113649 508.58 3812.74 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. zgc:153129 zgc:153129 454.25 3405.43
36. acta1b ENSDARG00000055618 436.44 3271.92 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
37. zgc:92533 zgc:92533 415.95 3118.31
38. zgc:112425 zgc:112425 379.43 2844.52
39. rbp4 ENSDARG00000101199 364.29 2731.02 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 344.70 2584.16 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. ppiaa ENSDARG00000009212 342.91 2570.74 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
42. cyt1l ENSDARG00000036832 333.12 2497.34 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
43. pvalb1 ENSDARG00000037789 322.43 2417.20 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
44. hmga1a ENSDARG00000028335 321.54 2410.53 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. mt-co1 ENSDARG00000063905 316.19 2370.42 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. myhz1.3 ENSDARG00000067997 303.72 2276.94 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
47. zgc:113413 zgc:113413 303.72 2276.94
48. myl1 ENSDARG00000014196 299.27 2243.58 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
49. si:ch211-226o13.2 294.82 2210.21 si:ch211-226o13.2
50. fetub ENSDARG00000053973 293.93 2203.54 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 285.91 2143.42 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. gatm ENSDARG00000036239 279.68 2096.71 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
53. tnnt3b ENSDARG00000068457 261.86 1963.12 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
54. pla2g12b ENSDARG00000015662 258.30 1936.43 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
55. sepp1a 255.63 1916.41 selenoprotein P, plasma, 1a
56. ctsla ENSDARG00000007836 254.74 1909.74 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
57. tnnt3a ENSDARG00000030270 251.17 1882.98 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
58. ttna ttna 249.39 1869.63
59. rpl10a ENSDARG00000042905, ENSDARG00000115649 246.72 1849.62 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
60. rps27a ENSDARG00000032725, ENSDARG00000114059 244.94 1836.27 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
61. rpl23 ENSDARG00000053457 243.16 1822.93 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
62. aldoab ENSDARG00000034470 237.81 1782.82 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
63. hspa8 ENSDARG00000068992, ENSDARG00000114726 235.14 1762.80 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
64. apoc2 ENSDARG00000092155 226.23 1696.01 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
65. acta1a ENSDARG00000036371 221.78 1662.65 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
66. rps23 ENSDARG00000021838 220.89 1655.97 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
67. rps26l ENSDARG00000030408 215.55 1615.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 213.76 1602.52 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. rpl8 ENSDARG00000014867 211.98 1589.18 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
70. rpl21 ENSDARG00000010516, ENSDARG00000110263 210.20 1575.83 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
71. eif5a ENSDARG00000017235 209.31 1569.16 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
72. cfl1l ENSDARG00000012972 208.42 1562.49 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
73. zgc:66286 zgc:66286 202.19 1515.78
74. paics ENSDARG00000033539 201.29 1509.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
75. tnni2a.4 ENSDARG00000029069 198.62 1489.02 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
76. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 194.17 1455.66 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
77. krt8 ENSDARG00000058358, ENSDARG00000109279 188.83 1415.63 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
78. pvalb9 ENSDARG00000071601, ENSDARG00000113946 187.04 1402.21 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
79. rpl26 ENSDARG00000102317 186.15 1395.53 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
80. rps20 ENSDARG00000036044 181.70 1362.17 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
81. rpl18a ENSDARG00000025073 180.81 1355.50 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
82. gapdh ENSDARG00000043457 178.14 1335.48 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
83. rpl9 ENSDARG00000037350, ENSDARG00000112384 172.79 1295.38 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
84. icn ENSDARG00000009978 171.90 1288.70 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
85. rps2 ENSDARG00000077291 171.90 1288.70 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
86. rpl19 ENSDARG00000013307 171.01 1282.03 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
87. psap ENSDARG00000013968 169.23 1268.69 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
88. pfn1 ENSDARG00000088091 168.34 1262.02 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
89. rpl36 ENSDARG00000100588 168.34 1262.02 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
90. hbae3 ENSDARG00000079305 167.45 1255.34 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
91. ptmab ENSDARG00000101766 163.00 1221.98 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
92. ttnb ttnb 163.00 1221.98
93. pabpc1a ENSDARG00000017219 162.10 1215.24 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
94. rplp1 ENSDARG00000021864 162.10 1215.24 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
95. rps12 ENSDARG00000036875, ENSDARG00000115157 162.10 1215.24 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
96. col1a1b ENSDARG00000035809 160.32 1201.89 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
97. rplp0 ENSDARG00000051783 159.43 1195.22 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. krt5 ENSDARG00000058371, ENSDARG00000112017 158.54 1188.55 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
99. ATP5B 155.87 1168.53 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
100. mylpfb ENSDARG00000002589 154.98 1161.86 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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