Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s27.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16457.44 123378.76
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3918.41 29375.69 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 1682.31 12612.01 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. tmsb4x ENSDARG00000077777 1558.28 11682.17 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. mt-nd2 ENSDARG00000063899 1314.87 9857.37 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. tpma ENSDARG00000033683 1218.21 9132.72 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
7. apoc1l apoc1l 1179.19 8840.20
8. apobb apobb 1093.59 8198.47
9. zgc:161979_1 zgc:161979_1 1085.44 8137.37
10. mt-nd4 ENSDARG00000063917 1065.06 7984.58 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. apoa2 ENSDARG00000015866 1025.46 7687.71 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
12. mt-atp6 ENSDARG00000063911 1019.05 7639.65 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. ckmb ENSDARG00000040565 929.38 6967.41 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
14. mt-co2 ENSDARG00000063908 918.31 6884.42 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. mt-co3 ENSDARG00000063912 862.99 6469.70 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. zgc:161979 zgc:161979 828.64 6212.18
17. hbae3 ENSDARG00000079305 825.73 6190.36 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
18. apoeb ENSDARG00000040295 796.61 5972.06 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
19. actb2 ENSDARG00000037870 786.13 5893.49 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. atp2a1 ENSDARG00000020574 765.75 5740.70 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. hbbe3 ENSDARG00000038147, ENSDARG00000109344 704.60 5282.27 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
22. apoa1a ENSDARG00000012076, ENSDARG00000110395 682.48 5116.44 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
23. ckma ENSDARG00000035327, ENSDARG00000114671 633.56 4749.70 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. mt-nd1 ENSDARG00000063895 589.89 4422.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. actc1b ENSDARG00000099197 579.41 4343.74 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
26. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 570.67 4278.22 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
27. eef1a1l1 ENSDARG00000020850 564.27 4230.24 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. apoa4 apoa4 535.15 4011.93
29. zgc:112425 zgc:112425 521.17 3907.13
30. pvalb2 ENSDARG00000002768, ENSDARG00000114085 517.10 3876.61 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
31. mt-cyb ENSDARG00000063924 515.35 3863.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. mylz3 ENSDARG00000017441 493.22 3697.59 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
33. si:dkey-151g10.6 si:dkey-151g10.6 489.15 3667.08
34. actb1 ENSDARG00000037746, ENSDARG00000113649 487.40 3653.96 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. hmga1a ENSDARG00000028335 470.51 3527.34 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
36. hbbe1.1 ENSDARG00000113599 465.27 3488.05 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
37. bhmt ENSDARG00000013430 446.05 3343.96 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
38. eef2b ENSDARG00000100371, ENSDARG00000109247 427.42 3204.30 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
39. tnnc2 ENSDARG00000070835, ENSDARG00000111155 412.28 3090.80 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
40. fabp2 ENSDARG00000006427, ENSDARG00000110230 377.92 2833.21 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
41. zgc:153129 zgc:153129 352.30 2641.14
42. ppiaa ENSDARG00000009212 340.66 2553.87 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
43. mt-co1 ENSDARG00000063905 333.09 2497.12 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
44. zgc:92533 zgc:92533 292.32 2191.48
45. zgc:113413 zgc:113413 288.25 2160.96
46. si:ch211-226o13.2 285.34 2139.15 si:ch211-226o13.2
47. hspa8 ENSDARG00000068992, ENSDARG00000114726 272.52 2043.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
48. gatm ENSDARG00000036239 263.79 1977.59 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
49. acta1b ENSDARG00000055618 263.21 1973.24 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
50. ptmab ENSDARG00000101766 262.04 1964.47 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
51. hbae1_1 258.55 1938.31 hemoglobin, alpha embryonic 1
52. rps27a ENSDARG00000032725, ENSDARG00000114059 258.55 1938.31 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. cyt1l ENSDARG00000036832 255.64 1916.49 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
54. rpl8 ENSDARG00000014867 242.24 1816.03 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. ctsla ENSDARG00000007836 232.34 1741.82 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
56. btf3 ENSDARG00000035400, ENSDARG00000116462 228.85 1715.65 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
57. myl1 ENSDARG00000014196 228.27 1711.30 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
58. rpl23 ENSDARG00000053457 228.27 1711.30 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
59. sepp1a 224.77 1685.06 selenoprotein P, plasma, 1a
60. rpl10a ENSDARG00000042905, ENSDARG00000115649 220.70 1654.55 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
61. rps26l ENSDARG00000030408 219.53 1645.78 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
62. hbbe1.1_1 ENSDARG00000113599 216.62 1623.97 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
63. rpl18a ENSDARG00000025073 213.13 1597.80 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
64. ttna ttna 210.22 1575.99
65. pabpc1a ENSDARG00000017219 207.30 1554.09 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
66. pvalb1 ENSDARG00000037789 206.72 1549.75 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
67. si:dkey-150i13.2 ENSDARG00000071052 206.14 1545.40 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
68. rpl26 ENSDARG00000102317 204.39 1532.28 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
69. eif5a ENSDARG00000017235 203.23 1523.58 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
70. rpl21 ENSDARG00000010516, ENSDARG00000110263 202.65 1519.23 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
71. rps23 ENSDARG00000021838 200.90 1506.11 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. fth1a ENSDARG00000015551 200.32 1501.77 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
73. tnnt3a ENSDARG00000030270 199.73 1497.34 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
74. fetub ENSDARG00000053973 192.16 1440.59 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
75. AL954137.2 ENSDARG00000114408 186.34 1396.96
76. rps2 ENSDARG00000077291 180.52 1353.33 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
77. rbp4 ENSDARG00000101199 179.94 1348.98 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
78. pla2g12b ENSDARG00000015662 176.44 1322.74 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
79. rpl36a ENSDARG00000058105, ENSDARG00000112656 176.44 1322.74 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
80. aldoab ENSDARG00000034470 175.28 1314.05 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
81. rpl11 ENSDARG00000043509 169.45 1270.34 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
82. rpl9 ENSDARG00000037350, ENSDARG00000112384 169.45 1270.34 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
83. krt5 ENSDARG00000058371, ENSDARG00000112017 168.87 1265.99 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
84. acta1a ENSDARG00000036371 167.71 1257.29 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
85. si:dkeyp-86f7.3 si:dkeyp-86f7.3 167.12 1252.87
86. rpl19 ENSDARG00000013307 165.38 1239.83 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
87. hsp90ab1 ENSDARG00000029150 164.21 1231.06 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
88. cirbp cirbp 160.72 1204.89
89. apoc2 ENSDARG00000092155 159.55 1196.12 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
90. tpm3 ENSDARG00000005162 156.64 1174.30 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
91. rplp1 ENSDARG00000021864 156.06 1169.96 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
92. tnni2a.4 ENSDARG00000029069 154.90 1161.26 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
93. tnnt3b ENSDARG00000068457 153.73 1152.49 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
94. zgc:66286 zgc:66286 153.73 1152.49
95. rps20 ENSDARG00000036044 153.15 1148.14 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
96. rplp0 ENSDARG00000051783 151.98 1139.37 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. AL935210.1 ENSDARG00000088330 147.91 1108.86 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
98. rps9 ENSDARG00000011405, ENSDARG00000113248 147.91 1108.86 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
99. ttnb ttnb 146.74 1100.09
100. cfl1l ENSDARG00000012972 145.58 1091.39 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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