Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s25.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15858.13 118871.86
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4116.76 30859.06 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 2061.66 15454.11 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. tmsb4x ENSDARG00000077777 1648.94 12360.38 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. apobb apobb 1417.31 10624.09
6. apoc1l apoc1l 1342.51 10063.40
7. zgc:161979_1 zgc:161979_1 1259.83 9443.63
8. mt-co2 ENSDARG00000063908 1240.15 9296.11 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1217.18 9123.93 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
10. zgc:161979 zgc:161979 1212.59 9089.52
11. apoa2 ENSDARG00000015866 1179.78 8843.58 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
12. hbae3 ENSDARG00000079305 1167.31 8750.11 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
13. hbbe1.1 ENSDARG00000113599 1073.48 8046.76 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
14. mt-nd2 ENSDARG00000063899 1067.58 8002.53 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-atp6 ENSDARG00000063911 1019.68 7643.48 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-nd4 ENSDARG00000063917 1019.02 7638.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. apoeb ENSDARG00000040295 908.13 6807.30 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
18. mt-co3 ENSDARG00000063912 816.27 6118.72 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. tpma ENSDARG00000033683 802.49 6015.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
20. apoa1a ENSDARG00000012076, ENSDARG00000110395 789.36 5917.01 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
21. actb2 ENSDARG00000037870 759.18 5690.78 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. apoa4 apoa4 740.81 5553.08
23. he1a 734.25 5503.91 hatching enzyme 1a, transcript variant X1
24. zgc:174855 ENSDARG00000094559 617.45 4628.38 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
25. atp2a1 ENSDARG00000020574 573.49 4298.86 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
26. mt-cyb ENSDARG00000063924 563.64 4225.02 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. eef1a1l1 ENSDARG00000020850 558.39 4185.67 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. mt-nd1 ENSDARG00000063895 557.08 4175.85 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. bhmt ENSDARG00000013430 551.18 4131.62 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
30. ckmb ENSDARG00000040565 541.99 4062.73 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
31. ckma ENSDARG00000035327, ENSDARG00000114671 527.55 3954.49 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
32. ctslb ENSDARG00000039173, ENSDARG00000074306 516.40 3870.91 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
33. zgc:112425 zgc:112425 472.44 3541.39
34. hbae1_1 466.53 3497.09 hemoglobin, alpha embryonic 1
35. si:dkey-269i1.3 451.44 3383.97 si:dkey-269i1.3
36. actb1 ENSDARG00000037746, ENSDARG00000113649 448.81 3364.26 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
37. fabp2 ENSDARG00000006427, ENSDARG00000110230 436.35 3270.86 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
38. wu:fa26c03 436.35 3270.86 wu:fa26c03
39. si:dkey-151g10.6 si:dkey-151g10.6 389.10 2916.68
40. eef2b ENSDARG00000100371, ENSDARG00000109247 377.95 2833.10 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. actc1b ENSDARG00000099197 358.92 2690.45 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
42. pvalb2 ENSDARG00000002768, ENSDARG00000114085 353.02 2646.22 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
43. zgc:153129 zgc:153129 351.70 2636.33
44. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 346.45 2596.97 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
45. ppiaa ENSDARG00000009212 345.80 2592.10 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
46. hmga1a ENSDARG00000028335 343.83 2577.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. hbbe1.1_1 ENSDARG00000113599 329.39 2469.09 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
48. mylz3 ENSDARG00000017441 320.86 2405.15 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
49. AL935210.1 ENSDARG00000088330 307.74 2306.81 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
50. fetub ENSDARG00000053973 289.37 2169.11 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
51. pabpc1a ENSDARG00000017219 281.49 2110.04 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
52. gatm ENSDARG00000036239 277.56 2080.58 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
53. hspa8 ENSDARG00000068992, ENSDARG00000114726 277.56 2080.58 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
54. mt-co1 ENSDARG00000063905 276.90 2075.63 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
55. fth1a ENSDARG00000015551 273.62 2051.04 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
56. sepp1a 269.03 2016.64 selenoprotein P, plasma, 1a
57. zgc:92533 zgc:92533 265.09 1987.10
58. rpl18a ENSDARG00000025073 263.12 1972.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. rpl8 ENSDARG00000014867 255.90 1918.22 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
60. rps27a ENSDARG00000032725, ENSDARG00000114059 255.25 1913.34 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
61. wu:fb37b09 wu:fb37b09 249.34 1869.04
62. zgc:113413 zgc:113413 241.47 1810.05
63. ctsla ENSDARG00000007836 236.22 1770.69 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
64. rpl23 ENSDARG00000053457 234.91 1760.88 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
65. tnnc2 ENSDARG00000070835, ENSDARG00000111155 232.94 1746.11 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
66. rps23 ENSDARG00000021838 231.63 1736.29 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
67. cyt1l ENSDARG00000036832 229.66 1721.52 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
68. rps26l ENSDARG00000030408 229.66 1721.52 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
69. rpl10a ENSDARG00000042905, ENSDARG00000115649 227.03 1701.81 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
70. si:dkey-269i1.2 si:dkey-269i1.2 225.06 1687.04
71. btf3 ENSDARG00000035400, ENSDARG00000116462 222.44 1667.40 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
72. apoc2 ENSDARG00000092155 216.53 1623.10 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
73. CABZ01044814.2 CABZ01044814.2 213.91 1603.46
74. pla2g12b ENSDARG00000015662 211.28 1583.75 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
75. rplp1 ENSDARG00000021864 206.69 1549.34 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. eif5a ENSDARG00000017235 204.07 1529.70 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
77. rpl19 ENSDARG00000013307 202.75 1519.81 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
78. ptmab ENSDARG00000101766 199.47 1495.22 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
79. rpl36a ENSDARG00000058105, ENSDARG00000112656 195.54 1465.76 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
80. si:busm1-118j2.5 si:busm1-118j2.5 192.26 1441.17
81. rpl26 ENSDARG00000102317 186.35 1396.87 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
82. rpl21 ENSDARG00000010516, ENSDARG00000110263 185.04 1387.05 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
83. rps20 ENSDARG00000036044 184.38 1382.10 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
84. pvalb9 ENSDARG00000071601, ENSDARG00000113946 183.73 1377.23 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
85. si:ch211-226o13.2 182.41 1367.34 si:ch211-226o13.2
86. rbp4 ENSDARG00000101199 181.10 1357.52 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
87. zgc:174153 ENSDARG00000079376 181.10 1357.52 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
88. rpl9 ENSDARG00000037350, ENSDARG00000112384 179.13 1342.75 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
89. paics ENSDARG00000033539 176.51 1323.11 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
90. krt8 ENSDARG00000058358, ENSDARG00000109279 175.85 1318.16 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
91. psap ENSDARG00000013968 175.85 1318.16 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
92. rps15 ENSDARG00000070849, ENSDARG00000110979 171.26 1283.76 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
93. AL954137.2 ENSDARG00000114408 164.04 1229.64
94. hbae1 163.38 1224.69 hemoglobin, alpha embryonic 1
95. acta1b ENSDARG00000055618 162.07 1214.87 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
96. tfa ENSDARG00000016771 162.07 1214.87 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
97. tpm3 ENSDARG00000005162 162.07 1214.87 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
98. rps2 ENSDARG00000077291 155.51 1165.70 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
99. rpl27 ENSDARG00000015128 153.54 1150.93 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
100. cfl1l ENSDARG00000012972 152.89 1146.06 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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