Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s24.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17871.79 133959.59
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2997.18 22465.63 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1607.58 12049.76 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1388.05 10404.25 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1139.02 8537.63 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
6. mt-nd2 ENSDARG00000063899 1037.03 7773.15 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. apoa1b ENSDARG00000101324 1028.23 7707.19 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
8. mt-atp6 ENSDARG00000063911 992.50 7439.37 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-nd4 ENSDARG00000063917 960.92 7202.66 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. hbae3 ENSDARG00000079305 921.06 6903.89 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
11. tpma ENSDARG00000033683 848.05 6356.63 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
12. actb2 ENSDARG00000037870 794.73 5956.97 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. zgc:161979_1 zgc:161979_1 793.17 5945.28
14. zgc:161979 zgc:161979 761.59 5708.57
15. he1a 752.27 5638.71 hatching enzyme 1a, transcript variant X1
16. zgc:112425 zgc:112425 741.92 5561.13
17. mt-co3 ENSDARG00000063912 737.26 5526.20 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. apoc1l apoc1l 734.15 5502.89
19. apobb apobb 679.27 5091.53
20. hmga1a ENSDARG00000028335 622.32 4664.65 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
21. eef1a1l1 ENSDARG00000020850 607.82 4555.97 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
22. ckmb ENSDARG00000040565 595.92 4466.77 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
23. apoa2 ENSDARG00000015866 594.88 4458.98 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
24. hbbe1.1 ENSDARG00000113599 573.14 4296.02 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
25. si:dkey-151g10.6 si:dkey-151g10.6 560.71 4202.85
26. atp2a1 ENSDARG00000020574 503.76 3775.98 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
27. mt-nd1 ENSDARG00000063895 503.24 3772.08 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. ppiaa ENSDARG00000009212 489.78 3671.19 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. ckma ENSDARG00000035327, ENSDARG00000114671 482.01 3612.95 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
30. mt-cyb ENSDARG00000063924 473.73 3550.89 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. zgc:174855 ENSDARG00000094559 469.07 3515.96 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
32. ctslb ENSDARG00000039173, ENSDARG00000074306 449.40 3368.52 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 434.38 3255.93 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. pvalb2 ENSDARG00000002768, ENSDARG00000114085 410.05 3073.57 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
35. apoa4 apoa4 409.53 3069.67
36. ptmab ENSDARG00000101766 409.01 3065.77 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
37. hbae1_1 399.18 2992.09 hemoglobin, alpha embryonic 1
38. eef2b ENSDARG00000100371, ENSDARG00000109247 394.00 2953.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
39. si:dkey-269i1.3 392.96 2945.47 si:dkey-269i1.3
40. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 387.27 2902.82 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
41. apoa1a ENSDARG00000012076, ENSDARG00000110395 381.57 2860.09 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
42. mylz3 ENSDARG00000017441 381.05 2856.19 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
43. apoeb ENSDARG00000040295 375.36 2813.54 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
44. actc1b ENSDARG00000099197 371.74 2786.41 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
45. bhmt ENSDARG00000013430 343.78 2576.83 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
46. hspa8 ENSDARG00000068992, ENSDARG00000114726 331.35 2483.66 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
47. AL954137.2 ENSDARG00000114408 325.66 2441.01
48. rpl10a ENSDARG00000042905, ENSDARG00000115649 314.27 2355.64 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
49. wu:fa26c03 312.71 2343.95 wu:fa26c03
50. AL935210.1 ENSDARG00000088330 310.64 2328.43 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
51. mt-co1 ENSDARG00000063905 304.95 2285.78 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
52. rps27a ENSDARG00000032725, ENSDARG00000114059 303.91 2277.98 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. rpl23 ENSDARG00000053457 298.73 2239.16 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
54. rpl8 ENSDARG00000014867 284.24 2130.55 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. rpl18a ENSDARG00000025073 281.13 2107.23 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
56. hbbe1.1_1 ENSDARG00000113599 275.44 2064.58 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
57. eif5a ENSDARG00000017235 274.92 2060.69 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. rps23 ENSDARG00000021838 268.71 2014.14 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. tnnc2 ENSDARG00000070835, ENSDARG00000111155 267.67 2006.34 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
60. btf3 ENSDARG00000035400, ENSDARG00000116462 265.60 1990.83 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
61. zgc:153129 zgc:153129 264.56 1983.03
62. zgc:92533 zgc:92533 256.28 1920.97
63. rpl21 ENSDARG00000010516, ENSDARG00000110263 252.14 1889.94 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
64. rps26l ENSDARG00000030408 251.62 1886.04 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
65. rps20 ENSDARG00000036044 245.93 1843.39 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
66. pabpc1a ENSDARG00000017219 241.27 1808.46 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
67. rpl26 ENSDARG00000102317 235.05 1761.84 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 231.95 1738.60 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. cyt1l ENSDARG00000036832 230.39 1726.91 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
70. hsp90ab1 ENSDARG00000029150 226.77 1699.77 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
71. si:dkey-269i1.2 si:dkey-269i1.2 219.00 1641.53
72. zgc:113413 zgc:113413 218.49 1637.71
73. rpl9 ENSDARG00000037350, ENSDARG00000112384 216.41 1622.12 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
74. fabp2 ENSDARG00000006427, ENSDARG00000110230 214.86 1610.50 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
75. rplp1 ENSDARG00000021864 212.27 1591.09 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. fth1a ENSDARG00000015551 209.17 1567.85 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
77. CABZ01044814.2 CABZ01044814.2 200.88 1505.71
78. cirbp cirbp 200.36 1501.82
79. pcna ENSDARG00000054155 198.29 1486.30 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
80. ttna ttna 195.19 1463.06
81. id1 ENSDARG00000040764 193.63 1451.37 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 193.12 1447.55 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. rpl11 ENSDARG00000043509 192.08 1439.75 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
84. rps2 ENSDARG00000077291 190.01 1424.24 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
85. rps29 ENSDARG00000041232 190.01 1424.24 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
86. rpsa ENSDARG00000019181 187.94 1408.72 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
87. wu:fb37b09 wu:fb37b09 183.28 1373.79
88. rpl36 ENSDARG00000100588 179.14 1342.76 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
89. si:dkey-150i13.2 ENSDARG00000071052 178.62 1338.86 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
90. rpl27 ENSDARG00000015128 177.07 1327.24 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
91. cfl1 ENSDARG00000021124 175.51 1315.55 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
92. hnrnpab hnrnpab 174.48 1307.83
93. si:dkeyp-86f7.3 si:dkeyp-86f7.3 173.44 1300.03
94. rps14 ENSDARG00000036629 170.85 1280.62 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
95. hmgn2 ENSDARG00000099572 169.30 1269.00 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
96. rpl6 ENSDARG00000058451 168.78 1265.11 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. fabp3 ENSDARG00000023290 167.23 1253.49 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
98. rps5 ENSDARG00000043453 166.71 1249.59 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
99. rps12 ENSDARG00000036875, ENSDARG00000115157 163.09 1222.46 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
100. rpl19 ENSDARG00000013307 162.05 1214.66 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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