Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s23.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12275.97 92029.74
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2745.40 20581.55 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. he1a 2324.03 17422.65 hatching enzyme 1a, transcript variant X1
4. apoa1b ENSDARG00000101324 1294.38 9703.63 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. hbae3 ENSDARG00000079305 1237.99 9280.89 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
6. hbbe1.1 ENSDARG00000113599 1237.99 9280.89 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
7. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1212.40 9089.05 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
8. mt-co2 ENSDARG00000063908 1161.76 8709.41 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. tmsb4x ENSDARG00000077777 1122.07 8411.87 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. ctslb ENSDARG00000039173, ENSDARG00000074306 1044.27 7828.62 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
11. apobb apobb 1033.31 7746.45
12. zgc:174855 ENSDARG00000094559 984.75 7382.41 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
13. apoc1l apoc1l 919.48 6893.10
14. mt-nd2 ENSDARG00000063899 919.48 6893.10 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. zgc:161979 zgc:161979 908.52 6810.94
16. apoa2 ENSDARG00000015866 854.74 6407.76 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
17. si:dkey-269i1.3 854.22 6403.86 si:dkey-269i1.3
18. mt-atp6 ENSDARG00000063911 828.63 6212.02 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. tpma ENSDARG00000033683 787.90 5906.68 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
20. mt-nd4 ENSDARG00000063917 726.81 5448.70 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. actb2 ENSDARG00000037870 709.06 5315.64 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. zgc:161979_1 zgc:161979_1 688.70 5163.00
23. zgc:112425 zgc:112425 666.25 4994.70
24. eef1a1l1 ENSDARG00000020850 665.72 4990.73 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. mt-co3 ENSDARG00000063912 623.95 4677.59 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
26. ckmb ENSDARG00000040565 585.84 4391.89 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
27. apoeb ENSDARG00000040295 584.27 4380.12 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
28. atp2a1 ENSDARG00000020574 558.16 4184.38 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
29. he1b 532.58 3992.61 hatching enzyme 1b
30. hmga1a ENSDARG00000028335 524.75 3933.91 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. wu:fa26c03 523.70 3926.04 wu:fa26c03
32. ckma ENSDARG00000035327, ENSDARG00000114671 509.08 3816.44 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
33. si:dkey-151g10.6 si:dkey-151g10.6 505.43 3789.08
34. apoa1a ENSDARG00000012076, ENSDARG00000110395 486.11 3644.24 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
35. CABZ01044814.2 CABZ01044814.2 482.98 3620.77
36. ppiaa ENSDARG00000009212 473.06 3546.41 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
37. mt-nd1 ENSDARG00000063895 442.25 3315.43 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
38. mt-cyb ENSDARG00000063924 440.16 3299.76 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. actc1b ENSDARG00000099197 418.75 3139.26 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
40. wu:fb37b09 wu:fb37b09 404.13 3029.66
41. actb1 ENSDARG00000037746, ENSDARG00000113649 403.61 3025.76 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. eef2b ENSDARG00000100371, ENSDARG00000109247 399.96 2998.40 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
43. hbae1_1 392.65 2943.59 hemoglobin, alpha embryonic 1
44. apoa4 apoa4 378.03 2833.99
45. si:dkey-269i1.2 si:dkey-269i1.2 376.98 2826.12
46. hbbe1.1_1 ENSDARG00000113599 363.41 2724.39 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
47. zgc:174153 ENSDARG00000079376 354.01 2653.92 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
48. rpl23 ENSDARG00000053457 348.27 2610.89 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. mylz3 ENSDARG00000017441 345.13 2587.35 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
50. AL954137.2 ENSDARG00000114408 344.09 2579.55
51. pvalb2 ENSDARG00000002768, ENSDARG00000114085 340.43 2552.11 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
52. hspa8 ENSDARG00000068992, ENSDARG00000114726 339.91 2548.22 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
53. rpl10a ENSDARG00000042905, ENSDARG00000115649 336.26 2520.85 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
54. si:dkey-239j18.3 ENSDARG00000089806 323.20 2422.95 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
55. AL935210.1 ENSDARG00000088330 321.11 2407.28 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
56. bhmt ENSDARG00000013430 315.37 2364.25 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
57. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 315.37 2364.25 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
58. rpl8 ENSDARG00000014867 301.80 2262.52 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. zgc:153129 zgc:153129 300.23 2250.75
60. fabp2 ENSDARG00000006427, ENSDARG00000110230 280.91 2105.91 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
61. rpl18a ENSDARG00000025073 279.87 2098.11 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
62. ptmab ENSDARG00000101766 276.21 2070.67 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
63. rps27a ENSDARG00000032725, ENSDARG00000114059 274.12 2055.01 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. rpl21 ENSDARG00000010516, ENSDARG00000110263 268.90 2015.87 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
65. rplp1 ENSDARG00000021864 267.86 2008.08 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. fth1a ENSDARG00000015551 261.59 1961.07 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 254.80 1910.17 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. rpl26 ENSDARG00000102317 250.63 1878.91 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
69. rpl36a ENSDARG00000058105, ENSDARG00000112656 248.02 1859.34 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
70. tnnc2 ENSDARG00000070835, ENSDARG00000111155 246.45 1847.57 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
71. rps26l ENSDARG00000030408 245.93 1843.67 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
72. eif5a ENSDARG00000017235 238.62 1788.87 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. rps23 ENSDARG00000021838 238.62 1788.87 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
74. hsp90ab1 ENSDARG00000029150 236.53 1773.20 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
75. mt-co1 ENSDARG00000063905 236.53 1773.20 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
76. pabpc1a ENSDARG00000017219 229.22 1718.40 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
77. btf3 ENSDARG00000035400, ENSDARG00000116462 218.78 1640.14 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
78. rpl19 ENSDARG00000013307 215.12 1612.70 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
79. rps14 ENSDARG00000036629 211.99 1589.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
80. si:ch211-226o13.2 210.42 1577.46 si:ch211-226o13.2
81. cyt1l ENSDARG00000036832 209.38 1569.67 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
82. zgc:92533 zgc:92533 206.77 1550.10
83. rps20 ENSDARG00000036044 203.63 1526.56 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
84. pcna ENSDARG00000054155 202.59 1518.76 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
85. hmgn2 ENSDARG00000099572 201.54 1510.89 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
86. rps2 ENSDARG00000077291 200.50 1503.10 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
87. rpl36 ENSDARG00000100588 193.71 1452.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
88. si:dkeyp-86f7.3 si:dkeyp-86f7.3 193.19 1448.29
89. cirbp cirbp 192.15 1440.50
90. si:busm1-118j2.5 si:busm1-118j2.5 192.15 1440.50
91. rpl27 ENSDARG00000015128 188.49 1413.06 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
92. rps15 ENSDARG00000070849, ENSDARG00000110979 185.88 1393.49 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
93. id1 ENSDARG00000040764 182.23 1366.13 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
94. zgc:113413 zgc:113413 180.14 1350.46
95. gatm ENSDARG00000036239 179.09 1342.59 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
96. rpl11 ENSDARG00000043509 179.09 1342.59 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
97. rpsa ENSDARG00000019181 178.05 1334.79 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 177.00 1326.92 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. rps9 ENSDARG00000011405, ENSDARG00000113248 175.44 1315.23 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
100. fetub ENSDARG00000053973 171.78 1287.79 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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