Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s22.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17477.67 131024.32
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2745.23 20580.08 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. he1a 1692.84 12690.66 hatching enzyme 1a, transcript variant X1
4. tmsb4x ENSDARG00000077777 1379.82 10344.06 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. mt-co2 ENSDARG00000063908 1253.07 9393.85 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. hbae3 ENSDARG00000079305 1216.58 9120.30 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
7. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1123.44 8422.06 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
8. apoa1b ENSDARG00000101324 1096.56 8220.55 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
9. mt-nd2 ENSDARG00000063899 938.12 7032.78 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mt-atp6 ENSDARG00000063911 910.28 6824.07 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. zgc:161979_1 zgc:161979_1 822.90 6169.01
12. mt-nd4 ENSDARG00000063917 792.17 5938.64 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. ctslb ENSDARG00000039173, ENSDARG00000074306 790.25 5924.24 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
14. zgc:161979 zgc:161979 787.37 5902.65
15. zgc:112425 zgc:112425 779.69 5845.08
16. apoc1l apoc1l 770.09 5773.11
17. actb2 ENSDARG00000037870 753.76 5650.69 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. hbbe1.1 ENSDARG00000113599 752.80 5643.49 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
19. apobb apobb 749.92 5621.90
20. zgc:174855 ENSDARG00000094559 722.07 5413.12 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
21. mt-co3 ENSDARG00000063912 705.75 5290.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. si:dkey-151g10.6 si:dkey-151g10.6 695.19 5211.61
23. hmga1a ENSDARG00000028335 685.59 5139.64 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
24. si:dkey-269i1.3 668.30 5010.02 si:dkey-269i1.3
25. apoa2 ENSDARG00000015866 651.98 4887.68 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. eef1a1l1 ENSDARG00000020850 614.53 4606.93 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. tpma ENSDARG00000033683 560.76 4203.83 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
28. ppiaa ENSDARG00000009212 532.91 3995.05 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. hbae1_1 530.03 3973.46 hemoglobin, alpha embryonic 1
30. actb1 ENSDARG00000037746, ENSDARG00000113649 477.22 3577.56 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
31. mt-nd1 ENSDARG00000063895 470.50 3527.18 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
32. wu:fa26c03 450.34 3376.05 wu:fa26c03
33. apoeb ENSDARG00000040295 440.73 3304.01 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
34. apoa4 apoa4 437.85 3282.42
35. mt-cyb ENSDARG00000063924 430.17 3224.84 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. ckmb ENSDARG00000040565 429.21 3217.65 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
37. ptmab ENSDARG00000101766 411.93 3088.10 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
38. apoa1a ENSDARG00000012076, ENSDARG00000110395 404.25 3030.53 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
39. eef2b ENSDARG00000100371, ENSDARG00000109247 398.49 2987.35 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 373.52 2800.16 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. CABZ01044814.2 CABZ01044814.2 371.60 2785.76
42. he1b 369.68 2771.37 hatching enzyme 1b
43. rpl23 ENSDARG00000053457 351.44 2634.63 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 350.48 2627.43 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. bhmt ENSDARG00000013430 349.51 2620.16 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
46. hbbe1.1_1 ENSDARG00000113599 347.59 2605.77 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
47. rpl18a ENSDARG00000025073 344.71 2584.18 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. ckma ENSDARG00000035327, ENSDARG00000114671 340.87 2555.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
49. rpl8 ENSDARG00000014867 337.03 2526.60 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
50. AL954137.2 ENSDARG00000114408 333.19 2497.82
51. atp2a1 ENSDARG00000020574 306.31 2296.30 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
52. rps27a ENSDARG00000032725, ENSDARG00000114059 295.74 2217.07 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. AL935210.1 ENSDARG00000088330 289.98 2173.88 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
54. zgc:174153 ENSDARG00000079376 270.78 2029.95 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
55. si:dkey-269i1.2 si:dkey-269i1.2 269.82 2022.75
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 268.86 2015.55 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. rps23 ENSDARG00000021838 265.98 1993.96 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
58. zgc:153129 zgc:153129 264.06 1979.57
59. rplp1 ENSDARG00000021864 261.18 1957.98 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. hsp90ab1 ENSDARG00000029150 257.34 1929.19 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
61. si:dkey-239j18.3 ENSDARG00000089806 252.53 1893.13 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
62. wu:fb37b09 wu:fb37b09 252.53 1893.13
63. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 249.65 1871.54 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
64. rpl19 ENSDARG00000013307 249.65 1871.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. rpl36a ENSDARG00000058105, ENSDARG00000112656 249.65 1871.54 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
66. rps20 ENSDARG00000036044 249.65 1871.54 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
67. btf3 ENSDARG00000035400, ENSDARG00000116462 243.89 1828.36 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
68. fabp3 ENSDARG00000023290 242.93 1821.17 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
69. zgc:92533 zgc:92533 242.93 1821.17
70. fth1a ENSDARG00000015551 241.97 1813.97 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
71. rpl26 ENSDARG00000102317 240.05 1799.58 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
72. rps26l ENSDARG00000030408 236.21 1770.79 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
73. rpl36 ENSDARG00000100588 230.45 1727.61 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. pcna ENSDARG00000054155 229.49 1720.41 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
75. pvalb2 ENSDARG00000002768, ENSDARG00000114085 224.69 1684.43 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
76. mt-co1 ENSDARG00000063905 216.05 1619.66 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
77. rpl27 ENSDARG00000015128 216.05 1619.66 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
78. fabp2 ENSDARG00000006427, ENSDARG00000110230 213.17 1598.07 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
79. eif5a ENSDARG00000017235 212.21 1590.87 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
80. id1 ENSDARG00000040764 212.21 1590.87 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
81. mylz3 ENSDARG00000017441 211.25 1583.67 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
82. rps29 ENSDARG00000041232 204.52 1533.22 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
83. pabpc1a ENSDARG00000017219 200.68 1504.43 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
84. rpl9 ENSDARG00000037350, ENSDARG00000112384 199.72 1497.23 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
85. cyt1l ENSDARG00000036832 198.76 1490.04 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
86. rps14 ENSDARG00000036629 198.76 1490.04 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
87. hmgn2 ENSDARG00000099572 197.80 1482.84 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
88. rps6 ENSDARG00000019778 196.84 1475.64 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
89. cfl1 ENSDARG00000021124 194.92 1461.25 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
90. cirbp cirbp 193.96 1454.05
91. rps15 ENSDARG00000070849, ENSDARG00000110979 192.04 1439.66 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. rps5 ENSDARG00000043453 192.04 1439.66 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
93. rpl11 ENSDARG00000043509 188.20 1410.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
94. actc1b ENSDARG00000099197 186.28 1396.48 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
95. si:dkeyp-86f7.3 si:dkeyp-86f7.3 183.40 1374.89
96. rpsa ENSDARG00000019181 179.56 1346.10 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
97. hbae1 173.80 1302.92 hemoglobin, alpha embryonic 1
98. rps2 ENSDARG00000077291 173.80 1302.92 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
99. rpl7 ENSDARG00000007320 170.92 1281.33 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
100. rplp2l ENSDARG00000011201 170.92 1281.33 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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