Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s21.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15407.90 115500.75
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3267.49 24493.77 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1794.78 13454.04 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1153.50 8646.87 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. zgc:112425 zgc:112425 1058.63 7935.71
6. mt-nd2 ENSDARG00000063899 1050.89 7877.68 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1005.29 7535.86 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
8. apoa1b ENSDARG00000101324 1000.40 7499.20 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
9. he1a 995.11 7459.55 hatching enzyme 1a, transcript variant X1
10. hbae3 ENSDARG00000079305 951.54 7132.94 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
11. mt-nd4 ENSDARG00000063917 933.22 6995.61 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. mt-atp6 ENSDARG00000063911 846.90 6348.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-co3 ENSDARG00000063912 844.46 6330.24 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. zgc:161979 zgc:161979 808.22 6058.58
15. actb2 ENSDARG00000037870 789.49 5918.18 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. hmga1a ENSDARG00000028335 754.07 5652.66 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. hbbe1.1 ENSDARG00000113599 725.57 5439.02 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
18. si:dkey-151g10.6 si:dkey-151g10.6 699.91 5246.67
19. zgc:161979_1 zgc:161979_1 692.99 5194.79
20. apoc1l apoc1l 666.12 4993.37
21. apobb apobb 645.35 4837.67
22. apoa2 ENSDARG00000015866 638.84 4788.87 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
23. eef1a1l1 ENSDARG00000020850 610.34 4575.23 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. ppiaa ENSDARG00000009212 571.66 4285.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. ctslb ENSDARG00000039173, ENSDARG00000074306 543.16 4071.64 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
26. zgc:174855 ENSDARG00000094559 541.94 4062.49 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
27. mt-cyb ENSDARG00000063924 502.85 3769.47 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 463.35 3473.37 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. mt-nd1 ENSDARG00000063895 457.65 3430.64 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. si:dkey-269i1.3 450.73 3378.76 si:dkey-269i1.3
31. hspa8 ENSDARG00000068992, ENSDARG00000114726 442.99 3320.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
32. eef2b ENSDARG00000100371, ENSDARG00000109247 415.71 3116.25 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
33. apoa4 apoa4 405.94 3043.01
34. wu:fa26c03 394.95 2960.63 wu:fa26c03
35. ptmab ENSDARG00000101766 394.54 2957.55 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
36. hbae1_1 360.75 2704.26 hemoglobin, alpha embryonic 1
37. tpma ENSDARG00000033683 356.27 2670.67 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
38. apoeb ENSDARG00000040295 355.45 2664.53 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
39. apoa1a ENSDARG00000012076, ENSDARG00000110395 345.28 2588.29 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
40. rps27a ENSDARG00000032725, ENSDARG00000114059 331.84 2487.54 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
41. AL954137.2 ENSDARG00000114408 330.62 2478.39
42. bhmt ENSDARG00000013430 324.92 2435.67 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
43. hbbe1.1_1 ENSDARG00000113599 314.33 2356.28 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
44. rpl23 ENSDARG00000053457 307.41 2304.41 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. rpl18a ENSDARG00000025073 302.93 2270.82 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
46. ckmb ENSDARG00000040565 287.05 2151.79 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 284.61 2133.49 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 284.20 2130.42 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. rps23 ENSDARG00000021838 284.20 2130.42 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. rpl8 ENSDARG00000014867 281.35 2109.06 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. rpl26 ENSDARG00000102317 280.94 2105.98 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. pcna ENSDARG00000054155 274.84 2060.26 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
53. zgc:153129 zgc:153129 270.76 2029.67
54. rpl21 ENSDARG00000010516, ENSDARG00000110263 270.36 2026.67 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
55. CABZ01044814.2 CABZ01044814.2 259.36 1944.22
56. rplp1 ENSDARG00000021864 258.96 1941.22 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. wu:fb37b09 wu:fb37b09 251.22 1883.20
58. pabpc1a ENSDARG00000017219 250.00 1874.05 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
59. hmgn2 ENSDARG00000099572 248.78 1864.91 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
60. zgc:92533 zgc:92533 247.15 1852.69
61. rpl36a ENSDARG00000058105, ENSDARG00000112656 240.63 1803.81 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
62. AL935210.1 ENSDARG00000088330 239.01 1791.67 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
63. fth1a ENSDARG00000015551 238.19 1785.52 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
64. si:dkey-269i1.2 si:dkey-269i1.2 228.83 1715.36
65. rps26l ENSDARG00000030408 225.16 1687.85 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
66. zgc:113413 zgc:113413 223.94 1678.70
67. mt-co1 ENSDARG00000063905 223.53 1675.63 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
68. hsp90ab1 ENSDARG00000029150 220.28 1651.26 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
69. rpl19 ENSDARG00000013307 219.46 1645.12 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
70. cfl1 ENSDARG00000021124 213.35 1599.31 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
71. he1b 212.54 1593.24 hatching enzyme 1b
72. rps14 ENSDARG00000036629 210.10 1574.95 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
73. atp2a1 ENSDARG00000020574 208.47 1562.73 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
74. zgc:174153 ENSDARG00000079376 208.47 1562.73 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
75. id1 ENSDARG00000040764 207.65 1556.59 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
76. cirbp cirbp 206.02 1544.37
77. rps15 ENSDARG00000070849, ENSDARG00000110979 205.21 1538.30 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
78. rps9 ENSDARG00000011405, ENSDARG00000113248 203.58 1526.08 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
79. eif5a ENSDARG00000017235 201.55 1510.86 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
80. fabp2 ENSDARG00000006427, ENSDARG00000110230 200.73 1504.71 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
81. rpl27 ENSDARG00000015128 200.32 1501.64 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. rpl11 ENSDARG00000043509 198.70 1489.50 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
83. cyt1l ENSDARG00000036832 197.88 1483.35 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
84. rps2 ENSDARG00000077291 197.07 1477.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
85. rps20 ENSDARG00000036044 195.44 1465.06 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. rpl9 ENSDARG00000037350, ENSDARG00000112384 194.22 1455.91 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
87. krt8 ENSDARG00000058358, ENSDARG00000109279 193.81 1452.84 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
88. ckma ENSDARG00000035327, ENSDARG00000114671 192.59 1443.69 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
89. rpl36 ENSDARG00000100588 192.59 1443.69 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
90. h3f3a 192.18 1440.62 H3 histone, family 3A, transcript variant X1
91. si:dkeyp-86f7.3 si:dkeyp-86f7.3 191.77 1437.55
92. hnrnpab hnrnpab 182.00 1364.31
93. faua ENSDARG00000099022 178.34 1336.87 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
94. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 174.27 1306.36 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
95. rpl6 ENSDARG00000058451 173.86 1303.29 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. ran ENSDARG00000057026 171.42 1285.00 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
97. gatm ENSDARG00000036239 171.01 1281.93 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
98. fkbp1aa ENSDARG00000022684 165.31 1239.20 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
99. si:ch1073-429i10.3 164.09 1230.05 si:ch1073-429i10.3, transcript variant X2
100. RPL29 ENSDARG00000077717 163.68 1226.98 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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