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Experiment Zebrafish_28hpf_whole2, section s20.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 7682.88 57596.76
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2993.54 22441.87 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2110.04 15818.48 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1568.20 11756.43 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. zgc:112425 zgc:112425 1154.88 8657.87
6. mt-nd2 ENSDARG00000063899 1024.97 7683.96 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. hmga1a ENSDARG00000028335 1016.65 7621.59 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
8. mt-atp6 ENSDARG00000063911 1010.64 7576.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-nd4 ENSDARG00000063917 944.53 7080.92 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. apoa1b ENSDARG00000101324 886.74 6647.68 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
11. actb2 ENSDARG00000037870 858.53 6436.20 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. si:dkey-151g10.6 si:dkey-151g10.6 852.99 6394.67
13. hbae3 ENSDARG00000079305 839.58 6294.14 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
14. hbbe3 ENSDARG00000038147, ENSDARG00000109344 833.57 6249.08 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
15. mt-co3 ENSDARG00000063912 822.93 6169.31 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. zgc:161979 zgc:161979 805.83 6041.12
17. ppiaa ENSDARG00000009212 727.23 5451.87 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
18. apobb apobb 718.91 5389.50
19. eef1a1l1 ENSDARG00000020850 679.61 5094.88 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. ptmab ENSDARG00000101766 602.41 4516.13 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
21. zgc:161979_1 zgc:161979_1 581.14 4356.67
22. apoa2 ENSDARG00000015866 565.88 4242.27 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
23. apoc1l apoc1l 534.45 4006.65
24. mt-nd1 ENSDARG00000063895 507.63 3805.58 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. eef2b ENSDARG00000100371, ENSDARG00000109247 507.17 3802.14 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
26. hbbe1.1 ENSDARG00000113599 470.64 3528.28 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
27. actb1 ENSDARG00000037746, ENSDARG00000113649 448.92 3365.45 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
28. mt-cyb ENSDARG00000063924 443.83 3327.29 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. he1a 439.21 3292.66 hatching enzyme 1a, transcript variant X1
30. AL954137.2 ENSDARG00000114408 423.95 3178.25
31. hbae1_1 411.01 3081.25 hemoglobin, alpha embryonic 1
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 387.43 2904.47 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. rps27a ENSDARG00000032725, ENSDARG00000114059 370.78 2779.65 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
34. bhmt ENSDARG00000013430 364.31 2731.15 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
35. rpl18a ENSDARG00000025073 361.07 2706.86 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. rpl8 ENSDARG00000014867 361.07 2706.86 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. rps26l ENSDARG00000030408 353.21 2647.93 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 352.75 2644.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. tpma ENSDARG00000033683 350.90 2630.62 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
40. apoa4 apoa4 341.66 2561.35
41. rpl23 ENSDARG00000053457 335.18 2512.77 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. rps23 ENSDARG00000021838 326.86 2450.39 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
43. zgc:174855 ENSDARG00000094559 313.92 2353.39 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
44. cirbp cirbp 310.68 2329.10
45. pcna ENSDARG00000054155 310.22 2325.65 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
46. fabp3 ENSDARG00000023290 305.13 2287.49 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
47. rps20 ENSDARG00000036044 304.21 2280.59 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
48. rpl21 ENSDARG00000010516, ENSDARG00000110263 302.82 2270.17 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
49. eif5a ENSDARG00000017235 300.51 2252.85 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
50. id1 ENSDARG00000040764 299.12 2242.43 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
51. rpl26 ENSDARG00000102317 292.19 2190.48 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. apoa1a ENSDARG00000012076, ENSDARG00000110395 290.80 2180.06 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
53. hmgn2 ENSDARG00000099572 288.03 2159.29 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
54. pabpc1a ENSDARG00000017219 285.25 2138.45 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
55. zgc:92533 zgc:92533 284.33 2131.56
56. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 280.63 2103.82 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
57. hsp90ab1 ENSDARG00000029150 279.71 2096.92 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
58. mt-co1 ENSDARG00000063905 278.32 2086.50 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
59. AL935210.1 ENSDARG00000088330 277.39 2079.53 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 268.15 2010.26 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. zgc:123194 zgc:123194 268.15 2010.26
62. ckmb ENSDARG00000040565 265.84 1992.94 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
63. apoeb ENSDARG00000040295 263.52 1975.55 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
64. btf3 ENSDARG00000035400, ENSDARG00000116462 262.60 1968.65 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
65. hnrnpab hnrnpab 256.59 1923.60
66. rps2 ENSDARG00000077291 254.28 1906.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. zgc:153129 zgc:153129 253.35 1899.31
68. cfl1 ENSDARG00000021124 249.19 1868.12 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
69. si:dkey-269i1.3 247.34 1854.25 si:dkey-269i1.3
70. rpl6 ENSDARG00000058451 245.96 1843.90 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
71. ctslb ENSDARG00000039173, ENSDARG00000074306 243.64 1826.51 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
72. rpl36 ENSDARG00000100588 243.64 1826.51 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
73. hbbe1.1_1 ENSDARG00000113599 240.41 1802.30 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
74. rpl9 ENSDARG00000037350, ENSDARG00000112384 240.41 1802.30 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
75. wu:fa26c03 233.94 1753.79 wu:fa26c03
76. rps15 ENSDARG00000070849, ENSDARG00000110979 232.09 1739.92 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
77. rps9 ENSDARG00000011405, ENSDARG00000113248 231.62 1736.40 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
78. rplp1 ENSDARG00000021864 231.16 1732.95 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
79. fth1a ENSDARG00000015551 227.46 1705.21 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
80. h3f3a 226.08 1694.87 H3 histone, family 3A, transcript variant X1
81. rpl19 ENSDARG00000013307 224.69 1684.45 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
82. rps29 ENSDARG00000041232 224.23 1681.00 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
83. cyt1l ENSDARG00000036832 223.76 1677.48 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
84. si:dkeyp-86f7.3 si:dkeyp-86f7.3 220.99 1656.71
85. rpl11 ENSDARG00000043509 219.14 1642.84 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
86. si:ch1073-429i10.3 219.14 1642.84 si:ch1073-429i10.3, transcript variant X2
87. rpsa ENSDARG00000019181 218.68 1639.39 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
88. h3f3d ENSDARG00000045248 215.44 1615.10 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
89. rps12 ENSDARG00000036875, ENSDARG00000115157 214.06 1604.76 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
90. RPL29 ENSDARG00000077717 204.81 1535.41 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
91. rplp0 ENSDARG00000051783 204.81 1535.41 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
92. rpl18 ENSDARG00000029533 203.42 1524.99 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. rpl27 ENSDARG00000015128 203.42 1524.99 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
94. rpl39 ENSDARG00000036316, ENSDARG00000117167 201.57 1511.12 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
95. rps6 ENSDARG00000019778 201.57 1511.12 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
96. faua ENSDARG00000099022 200.65 1504.23 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
97. khdrbs1a ENSDARG00000052856 200.19 1500.78 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
98. rps14 ENSDARG00000036629 196.49 1473.04 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
99. tuba8l4 ENSDARG00000006260 196.49 1473.04 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
100. rps15a ENSDARG00000010160 193.25 1448.75 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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