Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s19.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 3680.51 27594.00 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tmsb4x ENSDARG00000077777 2376.96 17820.86 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. AC024175.4 AC024175.4 1837.49 13776.27
4. he1a 1688.36 12658.19 hatching enzyme 1a, transcript variant X1
5. zgc:112425 zgc:112425 1565.00 11733.32
6. mt-nd2 ENSDARG00000063899 1522.65 11415.81 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. zgc:161979 zgc:161979 1399.29 10490.94
8. mt-nd4 ENSDARG00000063917 1147.05 8599.81 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1069.72 8020.05 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
10. rps26l ENSDARG00000030408 1021.85 7661.15 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
11. zgc:161979_1 zgc:161979_1 948.21 7109.04
12. apobb apobb 929.79 6970.94
13. zgc:174855 ENSDARG00000094559 861.67 6460.23 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
14. wu:fa26c03 834.05 6253.15 wu:fa26c03
15. ppiaa ENSDARG00000009212 817.48 6128.92 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
16. apoa2 ENSDARG00000015866 776.98 5825.28 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
17. eef1a1l1 ENSDARG00000020850 776.98 5825.28 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. ctslb ENSDARG00000039173, ENSDARG00000074306 767.77 5756.23 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
19. si:dkey-269i1.3 738.31 5535.35 si:dkey-269i1.3
20. mt-co2 ENSDARG00000063908 697.81 5231.71 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
21. hbae3 ENSDARG00000079305 684.92 5135.07 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 683.08 5121.28 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. hmga1a ENSDARG00000028335 668.35 5010.84 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
24. apoa1b ENSDARG00000101324 662.82 4969.38 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
25. actb2 ENSDARG00000037870 633.36 4748.51 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
26. si:dkey-151g10.6 si:dkey-151g10.6 609.43 4569.10
27. rps9 ENSDARG00000011405, ENSDARG00000113248 563.40 4224.00 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
28. apoa1a ENSDARG00000012076, ENSDARG00000110395 561.56 4210.20 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
29. pcna ENSDARG00000054155 541.31 4058.38 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
30. apoc1l apoc1l 493.44 3699.48
31. rpl9 ENSDARG00000037350, ENSDARG00000112384 487.91 3658.02 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
32. rpl27 ENSDARG00000015128 486.07 3644.23 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
33. hspa8 ENSDARG00000068992, ENSDARG00000114726 482.39 3616.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
34. mt-atp6 ENSDARG00000063911 463.98 3478.61 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
35. h3f3d ENSDARG00000045248 462.14 3464.82 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
36. hbbe1.1 ENSDARG00000113599 460.29 3450.95 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
37. rpl26 ENSDARG00000102317 456.61 3423.36 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
38. h3f3a 440.04 3299.13 H3 histone, family 3A, transcript variant X1
39. rpl36 ENSDARG00000100588 432.68 3243.95 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
40. rpl18a ENSDARG00000025073 430.84 3230.15 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. mt-co3 ENSDARG00000063912 425.31 3188.69 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
42. h2afvb ENSDARG00000116491 405.06 3036.87 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
43. rps23 ENSDARG00000021838 401.38 3009.28 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 397.69 2981.61 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
45. ptmab ENSDARG00000101766 386.65 2898.84 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
46. RPL29 ENSDARG00000077717 384.81 2885.05 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
47. CABZ01044814.2 CABZ01044814.2 381.12 2857.38
48. si:dkey-269i1.2 si:dkey-269i1.2 375.60 2816.00
49. mt-nd1 ENSDARG00000063895 370.08 2774.61 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
50. apoa4 apoa4 359.03 2691.77
51. cyt1l ENSDARG00000036832 346.14 2595.13 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
52. rpl19 ENSDARG00000013307 342.46 2567.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
53. rpl39 ENSDARG00000036316, ENSDARG00000117167 331.41 2484.69 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
54. rps27a ENSDARG00000032725, ENSDARG00000114059 316.68 2374.25 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. apoeb ENSDARG00000040295 314.84 2360.46 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
56. rpl22 ENSDARG00000070437 301.95 2263.82 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
57. hmgn2 ENSDARG00000099572 300.11 2250.02 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
58. rps6 ENSDARG00000019778 294.59 2208.64 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
59. actb1 ENSDARG00000037746, ENSDARG00000113649 292.75 2194.84 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
60. cirbp cirbp 281.70 2112.00
61. rps15a ENSDARG00000010160 281.70 2112.00 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
62. rplp1 ENSDARG00000021864 274.34 2056.82 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
63. ubc ENSDARG00000102632 270.65 2029.15 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
64. rpl8 ENSDARG00000014867 266.97 2001.56 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
65. eif5a ENSDARG00000017235 259.61 1946.38 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. rpl10a ENSDARG00000042905, ENSDARG00000115649 259.61 1946.38 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
67. seta ENSDARG00000031495 259.61 1946.38 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
68. bhmt ENSDARG00000013430 257.76 1932.51 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
69. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 248.56 1863.54 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
70. mt-cyb ENSDARG00000063924 246.72 1849.74 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
71. rps15 ENSDARG00000070849, ENSDARG00000110979 246.72 1849.74 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
72. ATP5B 244.88 1835.95 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
73. he1b 244.88 1835.95 hatching enzyme 1b
74. si:ch1073-429i10.3 241.19 1808.28 si:ch1073-429i10.3, transcript variant X2
75. rps27.1 ENSDARG00000023298 237.51 1780.69 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
76. khdrbs1a ENSDARG00000052856 233.83 1753.10 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
77. AL954137.2 ENSDARG00000114408 230.15 1725.51
78. si:dkey-239j18.3 ENSDARG00000089806 230.15 1725.51 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
79. fabp3 ENSDARG00000023290 224.62 1684.05 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. si:dkeyp-86f7.3 si:dkeyp-86f7.3 224.62 1684.05
81. cfl1 ENSDARG00000021124 222.78 1670.26 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
82. pabpc1a ENSDARG00000017219 222.78 1670.26 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
83. rps14 ENSDARG00000036629 222.78 1670.26 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
84. tuba8l4 ENSDARG00000006260 222.78 1670.26 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
85. rpl18 ENSDARG00000029533 213.58 1601.28 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
86. hbae1_1 209.89 1573.61 hemoglobin, alpha embryonic 1
87. rps20 ENSDARG00000036044 206.21 1546.02 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
88. zgc:56493 ENSDARG00000031435 204.37 1532.23 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
89. faua ENSDARG00000099022 202.53 1518.43 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. rps18 ENSDARG00000100392 202.53 1518.43 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
91. ywhabl ENSDARG00000040287 200.69 1504.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
92. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 198.85 1490.84 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
93. hnrnpab hnrnpab 195.16 1463.18
94. wu:fb37b09 wu:fb37b09 195.16 1463.18
95. hsp90ab1 ENSDARG00000029150 193.32 1449.38 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
96. zgc:123194 zgc:123194 193.32 1449.38
97. rpl14 ENSDARG00000103433 189.64 1421.79 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
98. cfl1l ENSDARG00000012972 185.96 1394.20 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
99. calm2a ENSDARG00000031427, ENSDARG00000111871 184.12 1380.41 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
100. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 184.12 1380.41 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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