Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s13.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. zgc:112425 zgc:112425 2589.28 19408.89
2. tmsb4x ENSDARG00000077777 1743.74 13070.84 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1737.16 13021.52 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-nd2 ENSDARG00000063899 1386.43 10392.49 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-nd4 ENSDARG00000063917 1379.20 10338.30 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. rps26l ENSDARG00000030408 1266.02 9489.91 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
7. hmga1a ENSDARG00000028335 1213.38 9095.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
8. ppiaa ENSDARG00000009212 1172.58 8789.50 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. mt-co2 ENSDARG00000063908 1090.33 8172.97 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. AC024175.4 AC024175.4 1011.37 7581.09
11. pcna ENSDARG00000054155 917.27 6875.73 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
12. actb2 ENSDARG00000037870 809.36 6066.85 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. h3f3d ENSDARG00000045248 679.07 5090.22 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
14. rpl36 ENSDARG00000100588 669.86 5021.18 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
15. ptmab ENSDARG00000101766 669.20 5016.23 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 641.56 4809.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. eef1a1l1 ENSDARG00000020850 634.98 4759.72 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. mt-atp6 ENSDARG00000063911 618.53 4636.42 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. si:dkey-151g10.6 si:dkey-151g10.6 611.29 4582.15
20. rps9 ENSDARG00000011405, ENSDARG00000113248 563.26 4222.12 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
21. hspa8 ENSDARG00000068992, ENSDARG00000114726 557.34 4177.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
22. rpl18a ENSDARG00000025073 557.34 4177.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
23. mt-co3 ENSDARG00000063912 551.42 4133.37 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
24. mt-nd1 ENSDARG00000063895 548.78 4113.58 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. rps23 ENSDARG00000021838 548.78 4113.58 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
26. h3f3a 533.65 4000.17 H3 histone, family 3A, transcript variant X1
27. rpl26 ENSDARG00000102317 517.20 3876.86 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
28. rps27a ENSDARG00000032725, ENSDARG00000114059 490.88 3679.57 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
29. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 488.25 3659.86 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
30. hmgn2 ENSDARG00000099572 465.87 3492.10 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
31. rpl27 ENSDARG00000015128 460.61 3452.67 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
32. rpl39 ENSDARG00000036316, ENSDARG00000117167 446.13 3344.13 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
33. fabp3 ENSDARG00000023290 445.48 3339.26 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
34. h2afvb ENSDARG00000116491 439.55 3294.81 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 432.31 3240.54 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. seta ENSDARG00000031495 424.42 3181.39 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
37. RPL29 ENSDARG00000077717 419.81 3146.84 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
38. si:ch1073-429i10.3 409.94 3072.85 si:ch1073-429i10.3, transcript variant X2
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 404.02 3028.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. cirbp cirbp 388.89 2915.07
41. rpl19 ENSDARG00000013307 375.07 2811.47 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
42. si:dkeyp-86f7.3 si:dkeyp-86f7.3 374.41 2806.53
43. khdrbs1a ENSDARG00000052856 359.28 2693.11 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
44. hnrnpab hnrnpab 345.46 2589.52
45. rps6 ENSDARG00000019778 343.48 2574.68 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
46. tuba8l4 ENSDARG00000006260 343.48 2574.68 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
47. rpl8 ENSDARG00000014867 340.85 2554.97 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 326.37 2446.43 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
49. top1l ENSDARG00000070545 318.48 2387.28 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
50. mt-cyb ENSDARG00000063924 316.50 2372.44 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 311.24 2333.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. ubc ENSDARG00000102632 310.58 2328.07 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
53. rps15a ENSDARG00000010160 302.03 2263.98 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
54. actb1 ENSDARG00000037746, ENSDARG00000113649 300.05 2249.13 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
55. eif5a2 ENSDARG00000056186 288.21 2160.38 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
56. AL954137.2 ENSDARG00000114408 286.24 2145.62
57. zgc:123194 zgc:123194 285.58 2140.67
58. hnrnpa0a ENSDARG00000089302 284.26 2130.77 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
59. TUBA1A ENSDARG00000001889 266.50 1997.65 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
60. rpl14 ENSDARG00000103433 266.50 1997.65 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
61. eif5a ENSDARG00000017235 265.84 1992.70 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
62. rps15 ENSDARG00000070849, ENSDARG00000110979 263.21 1972.99 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
63. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 262.55 1968.04 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
64. rps29 ENSDARG00000041232 256.63 1923.66 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
65. crygn2 ENSDARG00000030411 252.68 1894.05 crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
66. rps20 ENSDARG00000036044 248.73 1864.45 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
67. cfl1 ENSDARG00000021124 246.10 1844.73 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
68. rps14 ENSDARG00000036629 245.44 1839.78 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
69. rps27.1 ENSDARG00000023298 243.47 1825.02 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
70. ATP5B 240.83 1805.23 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
71. rps18 ENSDARG00000100392 240.83 1805.23 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
72. id1 ENSDARG00000040764 229.65 1721.43 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
73. marcksb ENSDARG00000008803 228.99 1716.48 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
74. rpl36a ENSDARG00000058105, ENSDARG00000112656 228.99 1716.48 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
75. zgc:56493 ENSDARG00000031435 227.67 1706.58 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
76. rpl18 ENSDARG00000029533 227.01 1701.64 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
77. hsp90ab1 ENSDARG00000029150 226.36 1696.76 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
78. ppp2cb ENSDARG00000099241, ENSDARG00000111489 224.38 1681.92 protein phosphatase 2, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-040426-2487]
79. rpl6 ENSDARG00000058451 219.12 1642.49 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
80. ppiab ENSDARG00000103994 218.46 1637.55 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
81. rplp1 ENSDARG00000021864 216.49 1622.78 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
82. faua ENSDARG00000099022 214.51 1607.94 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
83. rps2 ENSDARG00000077291 214.51 1607.94 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. rps13 ENSDARG00000036298, ENSDARG00000112818 209.91 1573.46 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
85. ywhabl ENSDARG00000040287 209.25 1568.51 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
86. UBC ENSDARG00000102632 207.93 1558.62 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
87. cox4i1 ENSDARG00000032970 205.96 1543.85 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
88. rpl28 ENSDARG00000005791 205.96 1543.85 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
89. rpl31 ENSDARG00000053365 202.67 1519.19 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
90. rps24 ENSDARG00000039347 200.04 1499.47 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
91. rpl30 ENSDARG00000035871, ENSDARG00000109253 195.43 1464.92 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
92. bzw1a ENSDARG00000010481 193.46 1450.15 basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
93. calm2a ENSDARG00000031427, ENSDARG00000111871 190.82 1430.36 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
94. pabpc1a ENSDARG00000017219 190.17 1425.49 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
95. oaz1b ENSDARG00000104782 186.88 1400.83 ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
96. ran ENSDARG00000057026 186.88 1400.83 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
97. hnrnpm ENSDARG00000061735 182.93 1371.22 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
98. rpl23 ENSDARG00000053457 179.64 1346.56 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
99. hnrnpub ENSDARG00000004735 178.32 1336.66 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
100. tubb4b ENSDARG00000002344 174.37 1307.05 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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