Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s63.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 36101.29 270624.71
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3701.40 27746.66 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 3194.36 23945.76 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoc1l apoc1l 2788.72 20904.97
5. mt-co2 ENSDARG00000063908 1166.19 8742.07 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. si:dkey-150i13.2 ENSDARG00000071052 963.38 7221.75 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
7. actb2 ENSDARG00000037870 659.15 4941.16 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. mt-co3 ENSDARG00000063912 659.15 4941.16 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. rpl36 ENSDARG00000100588 659.15 4941.16 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
10. si:dkey-151g10.6 si:dkey-151g10.6 659.15 4941.16
11. eef1a1l1 ENSDARG00000020850 608.45 4561.10 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. mt-atp6 ENSDARG00000063911 608.45 4561.10 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-nd2 ENSDARG00000063899 557.74 4180.96 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. apoeb ENSDARG00000040295 507.04 3800.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
15. efemp2a ENSDARG00000094324 507.04 3800.90 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
16. hmga1a ENSDARG00000028335 507.04 3800.90 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. ppiaa ENSDARG00000009212 507.04 3800.90 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
18. col1a1a ENSDARG00000012405, ENSDARG00000116113 456.34 3420.84 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 456.34 3420.84 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. krt8 ENSDARG00000058358, ENSDARG00000109279 456.34 3420.84 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
21. rpl21 ENSDARG00000010516, ENSDARG00000110263 456.34 3420.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
22. wu:fb17f05 wu:fb17f05 456.34 3420.84
23. actb1 ENSDARG00000037746, ENSDARG00000113649 405.63 3040.71 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. mt-nd4 ENSDARG00000063917 405.63 3040.71 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 405.63 3040.71 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. RPL37A RPL37A 354.93 2660.65
27. frem2a ENSDARG00000076856 354.93 2660.65 Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
28. myl12.1 ENSDARG00000099766 354.93 2660.65 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
29. rpl11 ENSDARG00000043509 354.93 2660.65 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
30. rpl18a ENSDARG00000025073 354.93 2660.65 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
31. rpl23 ENSDARG00000053457 354.93 2660.65 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. rpl35a ENSDARG00000088030 354.93 2660.65 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
33. rpl9 ENSDARG00000037350, ENSDARG00000112384 354.93 2660.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
34. rps14 ENSDARG00000036629 354.93 2660.65 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. si:dkeyp-86f7.3 si:dkeyp-86f7.3 354.93 2660.65
36. zgc:112425 zgc:112425 354.93 2660.65
37. AL954137.2 ENSDARG00000114408 304.22 2280.51
38. hsp90ab1 ENSDARG00000029150 304.22 2280.51 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
39. id1 ENSDARG00000040764 304.22 2280.51 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
40. mt-cyb ENSDARG00000063924 304.22 2280.51 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. mt-nd1 ENSDARG00000063895 304.22 2280.51 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
42. rpl39 ENSDARG00000036316, ENSDARG00000117167 304.22 2280.51 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
43. rpl6 ENSDARG00000058451 304.22 2280.51 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
44. rps18 ENSDARG00000100392 304.22 2280.51 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
45. rps23 ENSDARG00000021838 304.22 2280.51 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 304.22 2280.51 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. seta ENSDARG00000031495 304.22 2280.51 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
48. RPL29 ENSDARG00000077717 253.52 1900.45 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
49. antxr1c ENSDARG00000063612 253.52 1900.45 ANTXR cell adhesion molecule 1c [Source:ZFIN;Acc:ZDB-GENE-090514-5]
50. calrl calrl 253.52 1900.45
51. capns1b ENSDARG00000013804 253.52 1900.45 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
52. cfl1l ENSDARG00000012972 253.52 1900.45 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
53. col14a1a ENSDARG00000005762 253.52 1900.45 collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
54. icn ENSDARG00000009978 253.52 1900.45 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
55. im:7150988 ENSDARG00000109310 253.52 1900.45 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
56. krt18 ENSDARG00000018404, ENSDARG00000109528 253.52 1900.45 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
57. pak2a ENSDARG00000068177 253.52 1900.45 p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
58. pcna ENSDARG00000054155 253.52 1900.45 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
59. pfn1 ENSDARG00000088091 253.52 1900.45 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
60. rpl35 ENSDARG00000018334 253.52 1900.45 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
61. rpl38 ENSDARG00000006413 253.52 1900.45 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
62. rpl8 ENSDARG00000014867 253.52 1900.45 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
63. rplp1 ENSDARG00000021864 253.52 1900.45 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
64. rps20 ENSDARG00000036044 253.52 1900.45 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. rps5 ENSDARG00000043453 253.52 1900.45 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
66. rps6 ENSDARG00000019778 253.52 1900.45 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
67. rps7 ENSDARG00000042566 253.52 1900.45 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
68. srsf2a ENSDARG00000057484 253.52 1900.45 serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
69. zgc:92061 zgc:92061 253.52 1900.45
70. CABZ01034848.1 CABZ01034848.1 202.82 1520.39
71. CU914813.1 CU914813.1 202.82 1520.39
72. TEAD3 TEAD3 202.82 1520.39
73. atp5g1 202.82 1520.39 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
74. ddx5 ENSDARG00000038068 202.82 1520.39 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
75. erh ENSDARG00000032866 202.82 1520.39 enhancer of rudimentary homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-990415-57]
76. etv4 ENSDARG00000018303, ENSDARG00000115855 202.82 1520.39 ets variant 4 [Source:ZFIN;Acc:ZDB-GENE-990415-71]
77. fn1b ENSDARG00000006526 202.82 1520.39 fibronectin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6545]
78. mlf2 ENSDARG00000034616, ENSDARG00000110660 202.82 1520.39 myeloid leukemia factor 2 [Source:ZFIN;Acc:ZDB-GENE-050913-67]
79. pabpc1a ENSDARG00000017219 202.82 1520.39 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
80. ppiab ENSDARG00000103994 202.82 1520.39 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
81. rpl18 ENSDARG00000029533 202.82 1520.39 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 202.82 1520.39 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. rps10 ENSDARG00000034897 202.82 1520.39 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
84. rps19 ENSDARG00000030602 202.82 1520.39 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
85. rps26l ENSDARG00000030408 202.82 1520.39 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
86. rps29 ENSDARG00000041232 202.82 1520.39 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
87. rps4x ENSDARG00000014690 202.82 1520.39 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
88. si:ch1073-429i10.3 202.82 1520.39 si:ch1073-429i10.3, transcript variant X2
89. sparc ENSDARG00000019353 202.82 1520.39 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
90. top1l ENSDARG00000070545 202.82 1520.39 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
91. twist1a ENSDARG00000030402 202.82 1520.39 twist family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-000210-6]
92. ubc ENSDARG00000102632 202.82 1520.39 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
93. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 202.82 1520.39 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
94. AC024175.17 AC024175.17 152.11 1140.26
95. FOXK2 ENSDARG00000030583 152.11 1140.26 forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
96. HNRNPAB HNRNPAB 152.11 1140.26
97. NDNF ENSDARG00000062936 152.11 1140.26 neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
98. RPS17L RPS17L 152.11 1140.26
99. b3gnt2b ENSDARG00000091902 152.11 1140.26 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2b [Source:ZFIN;Acc:ZDB-GENE-050913-158]
100. bcam ENSDARG00000090190 152.11 1140.26 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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