Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s55.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22146.13 166000.14
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5737.24 43004.47 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2197.76 16473.69 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1408.25 10555.78 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-atp6 ENSDARG00000063911 1284.06 9624.89 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
6. mt-nd2 ENSDARG00000063899 1199.79 8993.23 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. si:dkey-151g10.6 si:dkey-151g10.6 966.92 7247.72
8. mt-nd4 ENSDARG00000063917 907.05 6798.95 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. zgc:112425 zgc:112425 844.95 6333.47
10. rpl10a ENSDARG00000042905, ENSDARG00000115649 720.76 5402.58 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
11. actb1 ENSDARG00000037746, ENSDARG00000113649 698.58 5236.33 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
12. efemp2a ENSDARG00000094324 647.57 4853.97 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
13. mt-co3 ENSDARG00000063912 634.27 4754.28 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd1 ENSDARG00000063895 632.05 4737.64 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. actb2 ENSDARG00000037870 623.18 4671.15 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. ppiaa ENSDARG00000009212 614.31 4604.67 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. eef1a1l1 ENSDARG00000020850 605.44 4538.18 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. zgc:92533 zgc:92533 581.04 4355.29
19. hmga1a ENSDARG00000028335 572.17 4288.80 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
20. acta1a ENSDARG00000036371 558.86 4189.03 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
21. rpl23 ENSDARG00000053457 541.12 4056.06 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. cyt1l ENSDARG00000036832 501.20 3756.83 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
23. mt-cyb ENSDARG00000063924 467.94 3507.53 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. rps23 ENSDARG00000021838 447.98 3357.91 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
25. rps14 ENSDARG00000036629 439.11 3291.42 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
26. rps26l ENSDARG00000030408 436.89 3274.78 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
27. rpl18a ENSDARG00000025073 434.67 3258.14 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
28. rpl36 ENSDARG00000100588 430.24 3224.94 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
29. rpl8 ENSDARG00000014867 428.02 3208.30 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 421.37 3158.45 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. myl10 ENSDARG00000062592 399.19 2992.20 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
32. rpl36a ENSDARG00000058105, ENSDARG00000112656 396.97 2975.56 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
33. btf3 ENSDARG00000035400, ENSDARG00000116462 383.67 2875.86 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
34. apoc1l apoc1l 381.45 2859.22
35. rpl11 ENSDARG00000043509 368.14 2759.46 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
36. rps15 ENSDARG00000070849, ENSDARG00000110979 363.71 2726.25 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 352.62 2643.12 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. rpl26 ENSDARG00000102317 352.62 2643.12 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. rps27a ENSDARG00000032725, ENSDARG00000114059 350.40 2626.48 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
40. rpl9 ENSDARG00000037350, ENSDARG00000112384 345.96 2593.20 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
41. cfl1l ENSDARG00000012972 334.88 2510.15 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
42. id1 ENSDARG00000040764 334.88 2510.15 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
43. zgc:66286 zgc:66286 314.92 2360.54
44. pcna ENSDARG00000054155 312.70 2343.90 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
45. ptmab ENSDARG00000101766 308.26 2310.62 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
46. rpl7 ENSDARG00000007320 306.05 2294.05 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
47. rps5 ENSDARG00000043453 303.83 2277.41 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
48. si:dkeyp-86f7.3 si:dkeyp-86f7.3 301.61 2260.77
49. rpl19 ENSDARG00000013307 297.17 2227.49 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
50. tpma ENSDARG00000033683 297.17 2227.49 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
51. cirbp cirbp 294.96 2210.92
52. krt8 ENSDARG00000058358, ENSDARG00000109279 294.96 2210.92 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
53. rps6 ENSDARG00000019778 292.74 2194.28 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
54. AL954137.2 ENSDARG00000114408 279.43 2094.52
55. rps20 ENSDARG00000036044 279.43 2094.52 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
56. rpl27 ENSDARG00000015128 277.21 2077.88 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
57. rps9 ENSDARG00000011405, ENSDARG00000113248 263.91 1978.18 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
58. rps19 ENSDARG00000030602 261.69 1961.54 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
59. RPL29 ENSDARG00000077717 259.47 1944.90 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
60. rplp1 ENSDARG00000021864 257.26 1928.34 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
61. fkbp1aa ENSDARG00000022684 255.04 1911.70 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
62. rpl35 ENSDARG00000018334 255.04 1911.70 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
63. rps15a ENSDARG00000010160 255.04 1911.70 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
64. rps4x ENSDARG00000014690 255.04 1911.70 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
65. rps2 ENSDARG00000077291 246.17 1845.21 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
66. eef2b ENSDARG00000100371, ENSDARG00000109247 237.30 1778.72 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
67. rpl15 ENSDARG00000009285 235.08 1762.08 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
68. rpl6 ENSDARG00000058451 235.08 1762.08 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
69. rpl5b ENSDARG00000015862, ENSDARG00000109661 232.86 1745.44 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
70. ran ENSDARG00000057026 226.21 1695.60 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
71. fabp3 ENSDARG00000023290 223.99 1678.96 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
72. eif5a ENSDARG00000017235 221.77 1662.32 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. rpl18 ENSDARG00000029533 221.77 1662.32 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
74. zgc:113413 zgc:113413 221.77 1662.32
75. rps27.1 ENSDARG00000023298 217.34 1629.11 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
76. pfn1 ENSDARG00000088091 215.12 1612.47 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
77. rps10 ENSDARG00000034897 215.12 1612.47 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
78. hsp90aa1.1 ENSDARG00000010478 212.90 1595.83 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
79. hsp90ab1 ENSDARG00000029150 208.47 1562.62 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
80. rps12 ENSDARG00000036875, ENSDARG00000115157 206.25 1545.98 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
81. rps7 ENSDARG00000042566 206.25 1545.98 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
82. RPL37A RPL37A 199.59 1496.06
83. rplp0 ENSDARG00000051783 197.38 1479.50 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
84. rplp2l ENSDARG00000011201 197.38 1479.50 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
85. rpsa ENSDARG00000019181 197.38 1479.50 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
86. rpl23a ENSDARG00000006316 195.16 1462.86 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
87. rps13 ENSDARG00000036298, ENSDARG00000112818 195.16 1462.86 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
88. cfl1 ENSDARG00000021124 192.94 1446.22 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
89. h3f3a 192.94 1446.22 H3 histone, family 3A, transcript variant X1
90. zgc:123194 zgc:123194 190.72 1429.57
91. faua ENSDARG00000099022 188.51 1413.01 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. si:dkey-150i13.2 ENSDARG00000071052 188.51 1413.01 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
93. bcam ENSDARG00000090190 186.29 1396.37 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
94. cd81 cd81 186.29 1396.37
95. rpl24 ENSDARG00000099104 186.29 1396.37 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
96. zgc:165571 zgc:165571 184.07 1379.73
97. rpl39 ENSDARG00000036316, ENSDARG00000117167 181.85 1363.09 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
98. rps24 ENSDARG00000039347 181.85 1363.09 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
99. ppiab ENSDARG00000103994 179.64 1346.52 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
100. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 177.42 1329.88 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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