Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s5.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21598.74 161922.34
2. krt4 ENSDARG00000017624, ENSDARG00000115790 12899.37 96704.54 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2231.54 16729.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. cyt1l ENSDARG00000036832 1560.26 11697.02 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
5. zgc:92533 zgc:92533 1542.12 11561.03
6. mt-co2 ENSDARG00000063908 916.20 6868.61 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. actb2 ENSDARG00000037870 843.63 6324.56 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. zgc:165571 zgc:165571 825.49 6188.57
9. hmga1a ENSDARG00000028335 789.20 5916.51 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. zgc:112425 zgc:112425 734.77 5508.45
11. mt-atp6 ENSDARG00000063911 716.63 5372.46 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-nd2 ENSDARG00000063899 680.35 5100.48 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. actb1 ENSDARG00000037746, ENSDARG00000113649 653.13 4896.41 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
14. zgc:113413 zgc:113413 653.13 4896.41
15. eef1a1l1 ENSDARG00000020850 644.06 4828.42 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. si:dkey-151g10.6 si:dkey-151g10.6 644.06 4828.42
17. mt-nd4 ENSDARG00000063917 634.99 4760.42 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. cfl1l ENSDARG00000012972 498.92 3740.32 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
19. pcna ENSDARG00000054155 489.85 3672.33 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
20. krt5 ENSDARG00000058371, ENSDARG00000112017 453.56 3400.27 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
21. mt-co3 ENSDARG00000063912 435.42 3264.27 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. rps26l ENSDARG00000030408 435.42 3264.27 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
23. rps14 ENSDARG00000036629 426.35 3196.28 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
24. id1 ENSDARG00000040764 417.28 3128.28 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
25. ppiaa ENSDARG00000009212 417.28 3128.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. rpl10a ENSDARG00000042905, ENSDARG00000115649 417.28 3128.28 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
27. rpl21 ENSDARG00000010516, ENSDARG00000110263 417.28 3128.28 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
28. CU914813.1 CU914813.1 399.14 2992.29
29. icn ENSDARG00000009978 380.99 2856.22 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
30. icn2 ENSDARG00000055514 380.99 2856.22 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 344.71 2584.24 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. krt8 ENSDARG00000058358, ENSDARG00000109279 344.71 2584.24 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
33. rpl36 ENSDARG00000100588 344.71 2584.24 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
34. hmgn2 ENSDARG00000099572 335.64 2516.24 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
35. hspa8 ENSDARG00000068992, ENSDARG00000114726 335.64 2516.24 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
36. mt-nd1 ENSDARG00000063895 335.64 2516.24 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. ptmab ENSDARG00000101766 335.64 2516.24 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
38. rpl23 ENSDARG00000053457 326.57 2448.24 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. rpl7 ENSDARG00000007320 326.57 2448.24 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
40. btf3 ENSDARG00000035400, ENSDARG00000116462 317.50 2380.25 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. rpl26 ENSDARG00000102317 317.50 2380.25 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. rpl8 ENSDARG00000014867 317.50 2380.25 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
43. rps27a ENSDARG00000032725, ENSDARG00000114059 317.50 2380.25 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
44. rps5 ENSDARG00000043453 308.42 2312.18 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
45. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 308.42 2312.18 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
46. si:ch211-157c3.4 ENSDARG00000087093 299.35 2244.18 si:ch211-157c3.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8454]
47. capns1b ENSDARG00000013804 290.28 2176.18 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
48. rps23 ENSDARG00000021838 290.28 2176.18 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
49. mt-cyb ENSDARG00000063924 281.21 2108.19 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
50. pfn1 ENSDARG00000088091 281.21 2108.19 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
51. rps15 ENSDARG00000070849, ENSDARG00000110979 281.21 2108.19 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
52. rpl18a ENSDARG00000025073 272.14 2040.19 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. rpl6 ENSDARG00000058451 263.07 1972.19 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
54. rps19 ENSDARG00000030602 263.07 1972.19 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
55. rpl11 ENSDARG00000043509 254.00 1904.20 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
56. rpl19 ENSDARG00000013307 254.00 1904.20 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. rpl36a ENSDARG00000058105, ENSDARG00000112656 254.00 1904.20 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 244.92 1836.13 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. rps20 ENSDARG00000036044 244.92 1836.13 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
60. rps6 ENSDARG00000019778 244.92 1836.13 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
61. zgc:123194 zgc:123194 244.92 1836.13
62. rpl18 ENSDARG00000029533 235.85 1768.13 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
63. rpl5b ENSDARG00000015862, ENSDARG00000109661 235.85 1768.13 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
64. rplp1 ENSDARG00000021864 235.85 1768.13 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
65. tuba8l ENSDARG00000042708 235.85 1768.13 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
66. AL954137.2 ENSDARG00000114408 217.71 1632.14
67. rps10 ENSDARG00000034897 217.71 1632.14 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
68. rps15a ENSDARG00000010160 217.71 1632.14 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. anxa1c ENSDARG00000104359 208.64 1564.14 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
70. h3f3a 208.64 1564.14 H3 histone, family 3A, transcript variant X1
71. hsp90ab1 ENSDARG00000029150 208.64 1564.14 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
72. rpl35 ENSDARG00000018334 208.64 1564.14 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
73. rpsa ENSDARG00000019181 208.64 1564.14 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
74. cirbp cirbp 199.57 1496.14
75. fabp3 ENSDARG00000023290 199.57 1496.14 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
76. rplp0 ENSDARG00000051783 199.57 1496.14 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
77. rps24 ENSDARG00000039347 199.57 1496.14 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
78. seta ENSDARG00000031495 199.57 1496.14 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
79. eif5a ENSDARG00000017235 190.50 1428.15 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
80. pabpc1a ENSDARG00000017219 190.50 1428.15 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
81. zgc:153129 zgc:153129 190.50 1428.15
82. FP067396.1 FP067396.1 181.43 1360.15
83. RPL29 ENSDARG00000077717 181.43 1360.15 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
84. mt-co1 ENSDARG00000063905 181.43 1360.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
85. rpl27 ENSDARG00000015128 181.43 1360.15 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
86. rps18 ENSDARG00000100392 181.43 1360.15 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
87. rps9 ENSDARG00000011405, ENSDARG00000113248 181.43 1360.15 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. si:dkeyp-86f7.3 si:dkeyp-86f7.3 181.43 1360.15
89. anxa1a ENSDARG00000026726 172.35 1292.08 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
90. calm2a ENSDARG00000031427, ENSDARG00000111871 172.35 1292.08 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
91. krt17 ENSDARG00000094041 172.35 1292.08 keratin 17 [Source:ZFIN;Acc:ZDB-GENE-060503-86]
92. rpl14 ENSDARG00000103433 172.35 1292.08 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
93. rps27.1 ENSDARG00000023298 172.35 1292.08 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
94. rps4x ENSDARG00000014690 172.35 1292.08 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
95. capn9 ENSDARG00000012341 163.28 1224.08 calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
96. cox8a ENSDARG00000095273 163.28 1224.08 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
97. im:7150988 ENSDARG00000109310 163.28 1224.08 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
98. ran ENSDARG00000057026 163.28 1224.08 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
99. rpl39 ENSDARG00000036316, ENSDARG00000117167 163.28 1224.08 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
100. rps12 ENSDARG00000036875, ENSDARG00000115157 163.28 1224.08 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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