Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s46.

Sample reads: 133,398. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 28856.94 216340.74
2. tmsb4x ENSDARG00000077777 4194.45 31445.83 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 4011.60 30075.00 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-nd4 ENSDARG00000063917 1756.46 13168.20 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. mt-nd2 ENSDARG00000063899 1656.73 12420.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. tpma ENSDARG00000033683 1473.88 11049.69 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
7. hbae3 ENSDARG00000079305 1451.71 10883.48 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
8. mt-nd1 ENSDARG00000063895 986.28 7394.15 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
9. rps26l ENSDARG00000030408 980.74 7352.62 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
10. mt-co2 ENSDARG00000063908 808.97 6064.86 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. acta1a ENSDARG00000036371 759.10 5690.98 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
12. zgc:112425 zgc:112425 759.10 5690.98
13. aldoab ENSDARG00000034470 731.40 5483.31 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
14. si:dkey-151g10.6 si:dkey-151g10.6 714.77 5358.64
15. ppiaa ENSDARG00000009212 598.42 4486.36 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
16. actc1b ENSDARG00000099197 565.17 4237.08 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
17. mt-co3 ENSDARG00000063912 565.17 4237.08 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. myl10 ENSDARG00000062592 509.76 3821.68 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
19. rpl35 ENSDARG00000018334 509.76 3821.68 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
20. rps15a ENSDARG00000010160 454.35 3406.27 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
21. hbbe1.1 ENSDARG00000113599 448.81 3364.73 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
22. actb2 ENSDARG00000037870 398.94 2990.86 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. eef1a1l1 ENSDARG00000020850 376.78 2824.72 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. rpl18 ENSDARG00000029533 376.78 2824.72 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
25. si:dkeyp-86f7.3 si:dkeyp-86f7.3 376.78 2824.72
26. atp2a1 ENSDARG00000020574 371.24 2783.19 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
27. ckmb ENSDARG00000040565 371.24 2783.19 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
28. hsp90aa1.1 ENSDARG00000010478 365.70 2741.66 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
29. mt-atp6 ENSDARG00000063911 354.62 2658.59 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
30. hbae1_1 349.08 2617.06 hemoglobin, alpha embryonic 1
31. hbbe3 ENSDARG00000038147, ENSDARG00000109344 349.08 2617.06 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
32. lama2 ENSDARG00000099390 349.08 2617.06 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
33. rps23 ENSDARG00000021838 349.08 2617.06 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
34. mt-cyb ENSDARG00000063924 343.53 2575.45 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 343.53 2575.45 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. rpl27 ENSDARG00000015128 337.99 2533.91 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
37. ttna ttna 337.99 2533.91
38. cyt1l ENSDARG00000036832 315.83 2367.78 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
39. rpl21 ENSDARG00000010516, ENSDARG00000110263 304.75 2284.71 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
40. rps14 ENSDARG00000036629 299.21 2243.18 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
41. rpl19 ENSDARG00000013307 293.67 2201.65 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
42. hspa8 ENSDARG00000068992, ENSDARG00000114726 288.13 2160.11 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
43. hmga1a ENSDARG00000028335 282.59 2118.58 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
44. zgc:113413 zgc:113413 282.59 2118.58
45. atp5g1 277.04 2076.97 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
46. rpl10a ENSDARG00000042905, ENSDARG00000115649 277.04 2076.97 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
47. cox4i1 ENSDARG00000032970 265.96 1993.90 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
48. rpl8 ENSDARG00000014867 265.96 1993.90 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 254.88 1910.84 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
50. rps20 ENSDARG00000036044 254.88 1910.84 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
51. RPL29 ENSDARG00000077717 249.34 1869.30 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
52. eef2b ENSDARG00000100371, ENSDARG00000109247 249.34 1869.30 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
53. rpl26 ENSDARG00000102317 249.34 1869.30 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
54. efemp2a ENSDARG00000094324 243.80 1827.77 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
55. rpl39 ENSDARG00000036316, ENSDARG00000117167 238.26 1786.24 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
56. UBC ENSDARG00000102632 232.72 1744.70 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
57. faua ENSDARG00000099022 232.72 1744.70 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
58. rpl11 ENSDARG00000043509 232.72 1744.70 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
59. zgc:66286 zgc:66286 232.72 1744.70
60. tnnc2 ENSDARG00000070835, ENSDARG00000111155 221.64 1661.64 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
61. cd81 cd81 216.09 1620.03
62. rpl18a ENSDARG00000025073 216.09 1620.03 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
63. fabp3 ENSDARG00000023290 210.55 1578.50 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
64. myhz1.3 ENSDARG00000067997 210.55 1578.50 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
65. myhz2 ENSDARG00000012944 210.55 1578.50 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
66. rpl9 ENSDARG00000037350, ENSDARG00000112384 210.55 1578.50 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
67. acta1b ENSDARG00000055618 205.01 1536.96 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
68. rps18 ENSDARG00000100392 199.47 1495.43 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
69. rps7 ENSDARG00000042566 199.47 1495.43 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
70. smyhc1 ENSDARG00000099959, ENSDARG00000115916 199.47 1495.43 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
71. ttnb ttnb 199.47 1495.43
72. cfl1 ENSDARG00000021124 193.93 1453.89 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
73. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 193.93 1453.89 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
74. hspe1 ENSDARG00000056167 188.39 1412.36 heat shock 10 protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-2]
75. oaz1b ENSDARG00000104782 188.39 1412.36 ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
76. pabpc1a ENSDARG00000017219 188.39 1412.36 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
77. rps2 ENSDARG00000077291 188.39 1412.36 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
78. tnnt2c ENSDARG00000032242 188.39 1412.36 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
79. cirbp cirbp 182.85 1370.83
80. id1 ENSDARG00000040764 182.85 1370.83 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
81. cfl1l ENSDARG00000012972 177.31 1329.29 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
82. hbbe1.1_1 ENSDARG00000113599 177.31 1329.29 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
83. rpl36 ENSDARG00000100588 177.31 1329.29 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
84. rpl22 ENSDARG00000070437 171.77 1287.76 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
85. rplp1 ENSDARG00000021864 171.77 1287.76 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
86. si:dkey-150i13.2 ENSDARG00000071052 171.77 1287.76 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
87. top1l ENSDARG00000070545 171.77 1287.76 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
88. zgc:56493 ENSDARG00000031435 171.77 1287.76 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
89. AL935210.1 ENSDARG00000088330 166.23 1246.23 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
90. h2afvb ENSDARG00000116491 166.23 1246.23 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
91. tnni2b.1 ENSDARG00000035958 166.23 1246.23 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
92. tpm2 ENSDARG00000104682 166.23 1246.23 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
93. calm2a ENSDARG00000031427, ENSDARG00000111871 160.69 1204.69 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
94. eif5a ENSDARG00000017235 160.69 1204.69 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
95. h3f3a 160.69 1204.69 H3 histone, family 3A, transcript variant X1
96. khdrbs1a ENSDARG00000052856 160.69 1204.69 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
97. rpl34 ENSDARG00000029500 160.69 1204.69 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
98. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 155.14 1163.09 proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
99. rps13 ENSDARG00000036298, ENSDARG00000112818 155.14 1163.09 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
100. ndufb9 ENSDARG00000041314, ENSDARG00000112557 149.60 1121.55 NADH:ubiquinone oxidoreductase subunit B9 [Source:ZFIN;Acc:ZDB-GENE-030131-8364]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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