Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s44.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20573.39 154214.74
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2442.48 18308.43 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1802.06 13507.94 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. tpma ENSDARG00000033683 1629.51 12214.54 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. tmsb4x ENSDARG00000077777 1615.27 12107.80 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. mt-atp6 ENSDARG00000063911 1497.86 11227.71 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-co2 ENSDARG00000063908 1373.34 10294.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mt-nd4 ENSDARG00000063917 1193.67 8947.55 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. ckmb ENSDARG00000040565 948.17 7107.33 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
10. mt-nd1 ENSDARG00000063895 836.10 6267.27 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
11. si:dkey-151g10.6 si:dkey-151g10.6 814.75 6107.23
12. actb2 ENSDARG00000037870 780.95 5853.87 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. mt-co3 ENSDARG00000063912 718.69 5387.18 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. zgc:112425 zgc:112425 620.85 4653.79
15. ppiaa ENSDARG00000009212 592.39 4440.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
16. eef1a1l1 ENSDARG00000020850 581.71 4360.40 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. actc1b ENSDARG00000099197 576.38 4320.45 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. mt-cyb ENSDARG00000063924 574.60 4307.11 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 563.92 4227.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. hbbe3 ENSDARG00000038147, ENSDARG00000109344 560.36 4200.37 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
21. acta1a ENSDARG00000036371 555.03 4160.41 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
22. hmga1a ENSDARG00000028335 517.67 3880.37 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
23. atp2a1 ENSDARG00000020574 508.78 3813.73 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
24. ckma ENSDARG00000035327, ENSDARG00000114671 507.00 3800.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
25. mylz3 ENSDARG00000017441 478.53 3586.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
26. apoa1b ENSDARG00000101324 474.98 3560.37 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. apoc1l apoc1l 462.52 3466.97
28. rpl10a ENSDARG00000042905, ENSDARG00000115649 446.51 3346.97 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
29. hbae3 ENSDARG00000079305 432.28 3240.30 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
30. rpl8 ENSDARG00000014867 432.28 3240.30 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
31. zgc:66286 zgc:66286 430.50 3226.96
32. btf3 ENSDARG00000035400, ENSDARG00000116462 428.72 3213.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
33. myl10 ENSDARG00000062592 416.27 3120.29 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
34. rpl18a ENSDARG00000025073 414.49 3106.95 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
35. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 400.26 3000.28 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
36. hspa8 ENSDARG00000068992, ENSDARG00000114726 394.92 2960.26 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 391.37 2933.64 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. rpl23 ENSDARG00000053457 391.37 2933.64 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. rpl36 ENSDARG00000100588 387.81 2906.96 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
40. rps26l ENSDARG00000030408 378.91 2840.25 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 371.80 2786.95 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. hsp90aa1.1 ENSDARG00000010478 361.12 2706.90 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
43. rps23 ENSDARG00000021838 343.33 2573.55 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. tnnc2 ENSDARG00000070835, ENSDARG00000111155 341.56 2560.28 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
45. apoa2 ENSDARG00000015866 338.00 2533.59 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
46. rpl36a ENSDARG00000058105, ENSDARG00000112656 311.31 2333.53 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
47. rpl26 ENSDARG00000102317 304.20 2280.23 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
48. rps14 ENSDARG00000036629 302.42 2266.89 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
49. mt-co1 ENSDARG00000063905 297.08 2226.86 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
50. rpl11 ENSDARG00000043509 297.08 2226.86 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
51. ttna ttna 297.08 2226.86
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 295.30 2213.52 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 291.75 2186.91 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. apobb apobb 289.97 2173.57
55. eif5a ENSDARG00000017235 289.97 2173.57 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
56. rpl19 ENSDARG00000013307 284.63 2133.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. rplp1 ENSDARG00000021864 273.96 2053.56 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
58. rps15 ENSDARG00000070849, ENSDARG00000110979 270.40 2026.87 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
59. apoeb ENSDARG00000040295 265.06 1986.85 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
60. fabp3 ENSDARG00000023290 263.28 1973.50 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
61. hbbe1.1 ENSDARG00000113599 263.28 1973.50 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
62. rps2 ENSDARG00000077291 263.28 1973.50 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
63. myhz1.3 ENSDARG00000067997 261.50 1960.16 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
64. rpl15 ENSDARG00000009285 261.50 1960.16 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
65. rps20 ENSDARG00000036044 257.95 1933.55 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
66. myhz2 ENSDARG00000012944 256.17 1920.21 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
67. rpl6 ENSDARG00000058451 256.17 1920.21 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
68. zgc:161979_1 zgc:161979_1 254.39 1906.87
69. si:dkey-150i13.2 ENSDARG00000071052 250.83 1880.18 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
70. RPL29 ENSDARG00000077717 240.16 1800.20 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
71. aldoab ENSDARG00000034470 240.16 1800.20 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
72. rpl35 ENSDARG00000018334 234.82 1760.17 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
73. ttnb ttnb 231.26 1733.49
74. pabpc1a ENSDARG00000017219 224.15 1680.19 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
75. cirbp cirbp 222.37 1666.85
76. rps15a ENSDARG00000010160 222.37 1666.85 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
77. zgc:161979 zgc:161979 220.59 1653.51
78. rps27.1 ENSDARG00000023298 218.81 1640.16 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
79. rps5 ENSDARG00000043453 217.03 1626.82 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
80. si:dkeyp-86f7.3 si:dkeyp-86f7.3 217.03 1626.82
81. rps19 ENSDARG00000030602 215.25 1613.48 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
82. rps6 ENSDARG00000019778 213.47 1600.14 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
83. tpm3 ENSDARG00000005162 213.47 1600.14 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
84. rpl18 ENSDARG00000029533 208.14 1560.18 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. acta1b ENSDARG00000055618 206.36 1546.84 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
86. zgc:92533 zgc:92533 202.80 1520.16
87. rpl27 ENSDARG00000015128 201.02 1506.81 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
88. hbae1_1 195.68 1466.78 hemoglobin, alpha embryonic 1
89. rpl39 ENSDARG00000036316, ENSDARG00000117167 193.90 1453.44 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
90. rpl7 ENSDARG00000007320 192.13 1440.17 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
91. lama2 ENSDARG00000099390 190.35 1426.83 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
92. rpl24 ENSDARG00000099104 188.57 1413.49 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 188.57 1413.49 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. atp5g3b 185.01 1386.80 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
95. id1 ENSDARG00000040764 185.01 1386.80 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
96. rps4x ENSDARG00000014690 183.23 1373.46 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
97. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 179.67 1346.78 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
98. rplp0 ENSDARG00000051783 179.67 1346.78 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
99. rps9 ENSDARG00000011405, ENSDARG00000113248 179.67 1346.78 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
100. rps10 ENSDARG00000034897 176.11 1320.09 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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