Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s42.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11359.51 85150.23
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4430.57 33211.30 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 3388.08 25396.85 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-nd4 ENSDARG00000063917 2615.20 19603.39 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. tpma ENSDARG00000033683 2399.52 17986.66 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. mt-nd2 ENSDARG00000063899 2040.04 15292.02 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-co2 ENSDARG00000063908 1401.97 10509.09 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. rps26l ENSDARG00000030408 1401.97 10509.09 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
9. zgc:161979_1 zgc:161979_1 1303.11 9768.04
10. actc1b ENSDARG00000099197 1132.36 8488.11 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. zgc:161979 zgc:161979 1024.51 7679.67
12. si:dkey-151g10.6 si:dkey-151g10.6 997.55 7477.58
13. mt-nd1 ENSDARG00000063895 970.59 7275.49 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. mt-co3 ENSDARG00000063912 925.66 6938.69 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. mt-atp6 ENSDARG00000063911 853.76 6399.74 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. acta1a ENSDARG00000036371 772.88 5793.46 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
17. apobb apobb 754.90 5658.69
18. ckmb ENSDARG00000040565 754.90 5658.69 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
19. apoa1b ENSDARG00000101324 745.92 5591.37 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
20. rpl35 ENSDARG00000018334 674.02 5052.42 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
21. aldoab ENSDARG00000034470 656.05 4917.71 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
22. actb2 ENSDARG00000037870 629.09 4715.62 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. apoa2 ENSDARG00000015866 629.09 4715.62 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
24. atp2a1 ENSDARG00000020574 584.15 4378.75 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
25. eef1a1l1 ENSDARG00000020850 530.23 3974.57 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. ppiaa ENSDARG00000009212 521.24 3907.18 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. apoeb ENSDARG00000040295 503.27 3772.48 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
28. zgc:112425 zgc:112425 494.28 3705.09
29. rps15a ENSDARG00000010160 476.31 3570.39 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
30. cyt1l ENSDARG00000036832 467.32 3503.00 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 467.32 3503.00 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. apoc1l apoc1l 458.33 3435.62
33. rpl8 ENSDARG00000014867 458.33 3435.62 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
34. tnnc2 ENSDARG00000070835, ENSDARG00000111155 449.35 3368.30 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
35. ckma ENSDARG00000035327, ENSDARG00000114671 422.39 3166.21 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
36. rpl27 ENSDARG00000015128 422.39 3166.21 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
37. apoa1a ENSDARG00000012076, ENSDARG00000110395 413.40 3098.82 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
38. myl10 ENSDARG00000062592 404.41 3031.43 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
39. mt-cyb ENSDARG00000063924 395.43 2964.12 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rpl18 ENSDARG00000029533 395.43 2964.12 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
41. hsp90aa1.1 ENSDARG00000010478 368.47 2762.03 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
42. myhz1.3 ENSDARG00000067997 368.47 2762.03 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
43. rpl26 ENSDARG00000102317 359.48 2694.64 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. apoa4 apoa4 350.49 2627.25
45. rps14 ENSDARG00000036629 350.49 2627.25 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
46. rps20 ENSDARG00000036044 350.49 2627.25 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
47. rpl39 ENSDARG00000036316, ENSDARG00000117167 341.50 2559.86 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
48. rpl36 ENSDARG00000100588 332.52 2492.55 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
49. hmga1a ENSDARG00000028335 314.54 2357.77 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
50. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 314.54 2357.77 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
51. faua ENSDARG00000099022 305.56 2290.46 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
52. hspa8 ENSDARG00000068992, ENSDARG00000114726 305.56 2290.46 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
53. rpl10a ENSDARG00000042905, ENSDARG00000115649 305.56 2290.46 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
54. tnnt2c ENSDARG00000032242 296.57 2223.07 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
55. hbae3 ENSDARG00000079305 278.60 2088.37 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
56. hbbe3 ENSDARG00000038147, ENSDARG00000109344 278.60 2088.37 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
57. rpl18a ENSDARG00000025073 278.60 2088.37 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
58. rps23 ENSDARG00000021838 278.60 2088.37 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. rpl19 ENSDARG00000013307 269.61 2020.98 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 269.61 2020.98 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. rps18 ENSDARG00000100392 269.61 2020.98 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
62. atp5g1 260.62 1953.59 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
63. rpl14 ENSDARG00000103433 260.62 1953.59 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
64. ttna ttna 260.62 1953.59
65. BX511252.1 BX511252.1 251.63 1886.20
66. atp5g3b 251.63 1886.20 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
67. rpl15 ENSDARG00000009285 251.63 1886.20 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
68. atp5c1 242.65 1818.89 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
69. rps27a ENSDARG00000032725, ENSDARG00000114059 242.65 1818.89 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
70. rps5 ENSDARG00000043453 242.65 1818.89 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
71. ATP5B 233.66 1751.50 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. pabpc1a ENSDARG00000017219 224.67 1684.11 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
73. rpl9 ENSDARG00000037350, ENSDARG00000112384 224.67 1684.11 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
74. zgc:113413 zgc:113413 224.67 1684.11
75. zgc:153129 zgc:153129 224.67 1684.11
76. zgc:56493 ENSDARG00000031435 224.67 1684.11 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
77. zgc:66286 zgc:66286 224.67 1684.11
78. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 215.69 1616.80 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
79. krt8 ENSDARG00000058358, ENSDARG00000109279 215.69 1616.80 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
80. mt-co1 ENSDARG00000063905 215.69 1616.80 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
81. pcna ENSDARG00000054155 215.69 1616.80 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
82. actb1 ENSDARG00000037746, ENSDARG00000113649 206.70 1549.41 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
83. atp5a1 206.70 1549.41 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
84. cfl1l ENSDARG00000012972 206.70 1549.41 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
85. cirbp cirbp 206.70 1549.41
86. eif5a ENSDARG00000017235 206.70 1549.41 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
87. rbp4 ENSDARG00000101199 206.70 1549.41 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
88. rpl34 ENSDARG00000029500 206.70 1549.41 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
89. rplp1 ENSDARG00000021864 206.70 1549.41 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
90. rps4x ENSDARG00000014690 206.70 1549.41 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
91. gapdh ENSDARG00000043457 197.71 1482.02 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
92. lama2 ENSDARG00000099390 197.71 1482.02 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
93. rpl11 ENSDARG00000043509 197.71 1482.02 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
94. rps15 ENSDARG00000070849, ENSDARG00000110979 197.71 1482.02 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
95. gamt ENSDARG00000070844, ENSDARG00000109945 188.73 1414.71 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
96. myhz2 ENSDARG00000012944 188.73 1414.71 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
97. si:dkey-150i13.2 ENSDARG00000071052 188.73 1414.71 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
98. RPL29 ENSDARG00000077717 179.74 1347.32 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
99. acta1b ENSDARG00000055618 179.74 1347.32 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
100. fabp3 ENSDARG00000023290 179.74 1347.32 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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