Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s41.

Sample reads: 133,397. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19441.48 145741.90
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3120.84 23395.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1818.44 13631.83 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. tpma ENSDARG00000033683 1723.93 12923.34 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. mt-nd4 ENSDARG00000063917 1463.07 10967.82 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. mt-atp6 ENSDARG00000063911 1423.38 10670.28 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-co2 ENSDARG00000063908 1196.54 8969.79 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. ckmb ENSDARG00000040565 1190.87 8927.29 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. tmsb4x ENSDARG00000077777 1164.41 8728.93 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. mt-co3 ENSDARG00000063912 818.49 6135.76 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. mt-nd1 ENSDARG00000063895 706.96 5299.68 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
12. eef1a1l1 ENSDARG00000020850 699.40 5243.01 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. si:dkey-151g10.6 si:dkey-151g10.6 688.06 5158.00
14. apoc1l apoc1l 684.28 5129.66
15. apoa1b ENSDARG00000101324 682.39 5115.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
16. ppiaa ENSDARG00000009212 663.49 4973.81 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. apoa2 ENSDARG00000015866 642.69 4817.89 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
18. actb2 ENSDARG00000037870 625.68 4690.37 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. mt-cyb ENSDARG00000063924 612.45 4591.20 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
20. zgc:112425 zgc:112425 603.00 4520.35
21. zgc:161979_1 zgc:161979_1 595.44 4463.68
22. acta1a ENSDARG00000036371 550.07 4123.57 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
23. ckma ENSDARG00000035327, ENSDARG00000114671 540.62 4052.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. actc1b ENSDARG00000099197 533.06 3996.05 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
25. atp2a1 ENSDARG00000020574 523.61 3925.21 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
26. zgc:161979 zgc:161979 516.05 3868.54
27. hmga1a ENSDARG00000028335 472.57 3542.59 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
28. apobb apobb 470.68 3528.42
29. myl10 ENSDARG00000062592 455.56 3415.08 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
30. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 451.78 3386.74 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
31. rpl23 ENSDARG00000053457 449.89 3372.57 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. apoeb ENSDARG00000040295 440.43 3301.66 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 419.64 3145.81 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. actb1 ENSDARG00000037746, ENSDARG00000113649 417.75 3131.64 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. mylz3 ENSDARG00000017441 400.74 3004.12 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
36. tnnc2 ENSDARG00000070835, ENSDARG00000111155 389.40 2919.11 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
37. rps23 ENSDARG00000021838 383.73 2876.61 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
38. rpl26 ENSDARG00000102317 372.38 2791.52 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. rpl21 ENSDARG00000010516, ENSDARG00000110263 370.49 2777.36 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
40. myhz1.3 ENSDARG00000067997 362.93 2720.68 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
41. rpl18a ENSDARG00000025073 362.93 2720.68 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
42. zgc:66286 zgc:66286 362.93 2720.68
43. hspa8 ENSDARG00000068992, ENSDARG00000114726 359.15 2692.35 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
44. rpl8 ENSDARG00000014867 355.37 2664.01 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. rps26l ENSDARG00000030408 349.70 2621.51 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
46. ttna ttna 340.25 2550.66
47. hsp90aa1.1 ENSDARG00000010478 332.69 2493.99 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 328.91 2465.65 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. eef2b ENSDARG00000100371, ENSDARG00000109247 327.02 2451.49 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
50. rps14 ENSDARG00000036629 319.46 2394.81 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
51. mt-co1 ENSDARG00000063905 298.66 2238.89 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
52. rpl27 ENSDARG00000015128 291.10 2182.21 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
53. rpl11 ENSDARG00000043509 289.21 2168.05 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. myhz2 ENSDARG00000012944 283.54 2125.54 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
55. rpl19 ENSDARG00000013307 283.54 2125.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
56. acta1b ENSDARG00000055618 281.65 2111.37 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
57. rpl9 ENSDARG00000037350, ENSDARG00000112384 281.65 2111.37 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
58. cyt1l ENSDARG00000036832 279.76 2097.20 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 277.87 2083.04 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. rps15 ENSDARG00000070849, ENSDARG00000110979 277.87 2083.04 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 275.98 2068.87 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. fabp3 ENSDARG00000023290 270.31 2026.36 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
63. rplp1 ENSDARG00000021864 270.31 2026.36 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
64. rpl36 ENSDARG00000100588 268.42 2012.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
65. apoa1a ENSDARG00000012076, ENSDARG00000110395 266.53 1998.03 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
66. tpm3 ENSDARG00000005162 266.53 1998.03 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
67. rps2 ENSDARG00000077291 236.28 1771.26 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
68. ttnb ttnb 234.39 1757.09
69. eif5a ENSDARG00000017235 226.83 1700.42 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
70. si:dkeyp-86f7.3 si:dkeyp-86f7.3 226.83 1700.42
71. aldoab ENSDARG00000034470 224.94 1686.25 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
72. zgc:92533 zgc:92533 224.94 1686.25
73. tnnt2c ENSDARG00000032242 221.16 1657.91 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
74. myl1 ENSDARG00000014196 219.27 1643.74 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
75. rplp0 ENSDARG00000051783 215.49 1615.41 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
76. rps20 ENSDARG00000036044 215.49 1615.41 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. RPL29 ENSDARG00000077717 213.60 1601.24 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
78. rpl6 ENSDARG00000058451 213.60 1601.24 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
79. ptmab ENSDARG00000101766 211.71 1587.07 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
80. si:dkey-150i13.2 ENSDARG00000071052 209.82 1572.90 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
81. AC024175.17 AC024175.17 206.04 1544.57
82. rpl18 ENSDARG00000029533 206.04 1544.57 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
83. rps4x ENSDARG00000014690 206.04 1544.57 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. rps19 ENSDARG00000030602 202.26 1516.23 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
85. apoa4 apoa4 200.37 1502.06
86. lama2 ENSDARG00000099390 200.37 1502.06 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
87. pcna ENSDARG00000054155 200.37 1502.06 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
88. rps15a ENSDARG00000010160 200.37 1502.06 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
89. rps6 ENSDARG00000019778 200.37 1502.06 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
90. zgc:153129 zgc:153129 200.37 1502.06
91. atp5g3b 194.70 1459.56 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
92. rpl39 ENSDARG00000036316, ENSDARG00000117167 194.70 1459.56 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
93. smyhc1 ENSDARG00000099959, ENSDARG00000115916 194.70 1459.56 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
94. rps27.1 ENSDARG00000023298 189.03 1417.05 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
95. rps12 ENSDARG00000036875, ENSDARG00000115157 187.14 1402.88 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
96. rpl5b ENSDARG00000015862, ENSDARG00000109661 183.36 1374.55 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
97. rpl35 ENSDARG00000018334 181.47 1360.38 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
98. cirbp cirbp 179.58 1346.21
99. fabp2 ENSDARG00000006427, ENSDARG00000110230 179.58 1346.21 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
100. tnni2b.1 ENSDARG00000035958 179.58 1346.21 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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