Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s28.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 29339.09 219916.79
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3667.52 27490.60 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2368.98 17757.14 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. tmsb4x ENSDARG00000077777 1573.74 11796.27 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. ckmb ENSDARG00000040565 1465.96 10988.38 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-nd2 ENSDARG00000063899 1440.85 10800.17 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-atp6 ENSDARG00000063911 1154.14 8651.08 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. actc1b ENSDARG00000099197 993.00 7443.22 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mt-nd4 ENSDARG00000063917 949.05 7113.79 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. mt-co2 ENSDARG00000063908 828.72 6211.83 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. atp2a1 ENSDARG00000020574 822.44 6164.76 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. mylz3 ENSDARG00000017441 791.05 5929.47 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
13. ckma ENSDARG00000035327, ENSDARG00000114671 768.03 5756.92 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. actb2 ENSDARG00000037870 678.05 5082.45 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. apoa1b ENSDARG00000101324 667.58 5003.97 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
16. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 661.30 4956.90 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
17. eef1a1l1 ENSDARG00000020850 611.08 4580.47 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. mt-co3 ENSDARG00000063912 601.66 4509.86 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mt-nd1 ENSDARG00000063895 601.66 4509.86 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. si:dkey-151g10.6 si:dkey-151g10.6 568.18 4258.90
21. zgc:112425 zgc:112425 543.06 4070.61
22. ttna ttna 542.02 4062.82
23. pvalb2 ENSDARG00000002768, ENSDARG00000114085 538.88 4039.28 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
24. tnnc2 ENSDARG00000070835, ENSDARG00000111155 532.60 3992.21 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
25. AC024175.17 AC024175.17 479.24 3592.24
26. apoc1l apoc1l 478.19 3584.37
27. mt-cyb ENSDARG00000063924 460.40 3451.02 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. ttnb ttnb 453.08 3396.15
29. myhz1.3 ENSDARG00000067997 448.89 3364.74 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
30. apoa2 ENSDARG00000015866 447.85 3356.95 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 445.75 3341.20 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. zgc:161979 zgc:161979 396.57 2972.57
33. actb1 ENSDARG00000037746, ENSDARG00000113649 390.29 2925.49 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. zgc:161979_1 zgc:161979_1 389.25 2917.70
35. lama2 ENSDARG00000099390 371.46 2784.35 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
36. hmga1a ENSDARG00000028335 369.37 2768.68 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. acta1a ENSDARG00000036371 348.44 2611.80 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
38. tnnt3a ENSDARG00000030270 331.70 2486.32 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
39. apoeb ENSDARG00000040295 323.33 2423.58 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
40. ppiaa ENSDARG00000009212 323.33 2423.58 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
41. hspa8 ENSDARG00000068992, ENSDARG00000114726 316.00 2368.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 302.40 2266.70 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. apobb apobb 292.98 2196.09
44. acta1b ENSDARG00000055618 281.47 2109.81 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
45. rpl23 ENSDARG00000053457 280.43 2102.02 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. myl1 ENSDARG00000014196 278.33 2086.28 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 274.15 2054.94 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. rpl21 ENSDARG00000010516, ENSDARG00000110263 267.87 2007.87 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
49. rps23 ENSDARG00000021838 259.50 1945.13 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. rpl18a ENSDARG00000025073 245.90 1843.19 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. tnnt3b ENSDARG00000068457 244.85 1835.32 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
52. rpl8 ENSDARG00000014867 240.66 1803.91 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. rps26l ENSDARG00000030408 235.43 1764.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
54. aldoab ENSDARG00000034470 231.25 1733.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
55. si:dkey-150i13.2 ENSDARG00000071052 231.25 1733.38 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
56. zgc:92533 zgc:92533 230.20 1725.51
57. tnni2a.4 ENSDARG00000029069 228.11 1709.84 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
58. mt-co1 ENSDARG00000063905 221.83 1662.77 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
59. apoa1a ENSDARG00000012076, ENSDARG00000110395 214.51 1607.90 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
60. cyt1l ENSDARG00000036832 213.46 1600.03 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
61. myl10 ENSDARG00000062592 213.46 1600.03 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
62. zgc:66286 zgc:66286 213.46 1600.03
63. rps27a ENSDARG00000032725, ENSDARG00000114059 211.37 1584.36 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. rpl9 ENSDARG00000037350, ENSDARG00000112384 210.32 1576.49 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
65. rps14 ENSDARG00000036629 209.27 1568.62 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
66. eif5a ENSDARG00000017235 204.04 1529.42 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
67. rpl11 ENSDARG00000043509 201.95 1513.76 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 198.81 1490.22 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. rpl26 ENSDARG00000102317 196.72 1474.55 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
70. rpl36 ENSDARG00000100588 193.58 1451.02 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
71. rps2 ENSDARG00000077291 192.53 1443.15 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. si:dkeyp-86f7.3 si:dkeyp-86f7.3 192.53 1443.15
73. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 182.07 1364.74 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
74. rps15 ENSDARG00000070849, ENSDARG00000110979 181.02 1356.87 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
75. zgc:113413 zgc:113413 178.93 1341.20
76. rbp4 ENSDARG00000101199 176.84 1325.54 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
77. hsp90aa1.1 ENSDARG00000010478 172.65 1294.13 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
78. pabpc1a ENSDARG00000017219 169.51 1270.59 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
79. ptmab ENSDARG00000101766 168.47 1262.80 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
80. rpl35 ENSDARG00000018334 168.47 1262.80 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
81. rplp0 ENSDARG00000051783 164.28 1231.39 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
82. rplp1 ENSDARG00000021864 164.28 1231.39 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
83. rps4x ENSDARG00000014690 164.28 1231.39 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. pvalb1 ENSDARG00000037789 161.14 1207.86 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
85. rps20 ENSDARG00000036044 161.14 1207.86 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. rpl19 ENSDARG00000013307 160.09 1199.99 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
87. fabp3 ENSDARG00000023290 155.91 1168.65 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
88. pcna ENSDARG00000054155 155.91 1168.65 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
89. rps6 ENSDARG00000019778 153.82 1152.99 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
90. atp5g3b 150.68 1129.45 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
91. faua ENSDARG00000099022 149.63 1121.58 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. RPL29 ENSDARG00000077717 147.54 1105.91 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. tpm3 ENSDARG00000005162 147.54 1105.91 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
94. hsp90ab1 ENSDARG00000029150 146.49 1098.04 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
95. rps9 ENSDARG00000011405, ENSDARG00000113248 146.49 1098.04 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
96. rpl6 ENSDARG00000058451 144.40 1082.38 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. rps12 ENSDARG00000036875, ENSDARG00000115157 144.40 1082.38 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
98. col1a1b ENSDARG00000035809 143.35 1074.51 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
99. nme2b.2 ENSDARG00000099420 142.31 1066.71 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
100. rbfox1l ENSDARG00000021184, ENSDARG00000111700 142.31 1066.71 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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