Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s23.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25745.70 193002.44
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3250.95 24370.72 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 2237.14 16770.70 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoc1l apoc1l 1624.48 12177.90
5. tmsb4x ENSDARG00000077777 1620.50 12148.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. apoa2 ENSDARG00000015866 1479.94 11094.36 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
7. mt-co2 ENSDARG00000063908 1404.35 10527.70 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. apobb apobb 1344.01 10075.36
9. tpma ENSDARG00000033683 1294.94 9707.51 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
10. zgc:161979_1 zgc:161979_1 1200.79 9001.71
11. zgc:161979 zgc:161979 1182.89 8867.53
12. mt-atp6 ENSDARG00000063911 1180.24 8847.66 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-nd2 ENSDARG00000063899 1089.40 8166.68 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. mt-nd4 ENSDARG00000063917 954.80 7157.65 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. ckmb ENSDARG00000040565 839.43 6292.78 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
16. apoa1a ENSDARG00000012076, ENSDARG00000110395 838.10 6282.81 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
17. apoeb ENSDARG00000040295 708.80 5313.51 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
18. hbbe3 ENSDARG00000038147, ENSDARG00000109344 643.16 4821.44 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
19. actb2 ENSDARG00000037870 617.97 4632.61 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. si:dkey-151g10.6 si:dkey-151g10.6 617.30 4627.58
21. mt-co3 ENSDARG00000063912 590.12 4423.83 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. hbae3 ENSDARG00000079305 567.57 4254.78 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
23. bhmt ENSDARG00000013430 537.74 4031.16 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
24. ckma ENSDARG00000035327, ENSDARG00000114671 535.08 4011.22 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
25. si:dkey-150i13.2 ENSDARG00000071052 529.78 3971.49 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
26. mt-nd1 ENSDARG00000063895 510.55 3827.33 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. atp2a1 ENSDARG00000020574 487.34 3653.34 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
28. apoa4 apoa4 484.69 3633.47
29. eef1a1l1 ENSDARG00000020850 484.03 3628.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. he1a 458.83 3439.62 hatching enzyme 1a, transcript variant X1
31. mt-cyb ENSDARG00000063924 456.18 3419.75 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. zgc:112425 zgc:112425 448.22 3360.08
33. pvalb2 ENSDARG00000002768, ENSDARG00000114085 446.90 3350.18 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
34. actc1b ENSDARG00000099197 425.02 3186.16 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
35. mylz3 ENSDARG00000017441 416.40 3121.54 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
36. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 412.42 3091.70 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
37. ctslb ENSDARG00000039173, ENSDARG00000074306 410.43 3076.79 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
38. wu:fa26c03 400.48 3002.20 wu:fa26c03
39. zgc:174855 ENSDARG00000094559 385.23 2887.87 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
40. hbbe1.1 ENSDARG00000113599 374.63 2808.41 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
41. ppiaa ENSDARG00000009212 360.04 2699.04 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
42. zgc:153129 zgc:153129 321.58 2410.72
43. hmga1a ENSDARG00000028335 316.94 2375.94 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 316.28 2370.99 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. fabp2 ENSDARG00000006427, ENSDARG00000110230 313.62 2351.05 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
46. CABZ01044814.2 CABZ01044814.2 308.98 2316.27
47. eef2b ENSDARG00000100371, ENSDARG00000109247 308.98 2316.27 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. tnnc2 ENSDARG00000070835, ENSDARG00000111155 293.73 2201.94 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
49. actb1 ENSDARG00000037746, ENSDARG00000113649 281.80 2112.51 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
50. rpl18a ENSDARG00000025073 278.48 2087.62 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. rpl23 ENSDARG00000053457 263.23 1973.30 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
52. fetub ENSDARG00000053973 257.93 1933.57 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
53. hbae1_1 255.28 1913.70 hemoglobin, alpha embryonic 1
54. ttna ttna 255.28 1913.70
55. gatm ENSDARG00000036239 251.30 1883.87 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
56. rpl8 ENSDARG00000014867 251.30 1883.87 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 242.01 1814.23 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. ttnb ttnb 241.35 1809.28
59. wu:fb37b09 wu:fb37b09 239.36 1794.36
60. ctsla ENSDARG00000007836 238.04 1784.47 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
61. rpl36 ENSDARG00000100588 237.37 1779.44 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. rps23 ENSDARG00000021838 228.09 1709.87 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
63. si:dkey-269i1.3 226.10 1694.96 si:dkey-269i1.3
64. lama2 ENSDARG00000099390 222.79 1670.14 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
65. btf3 ENSDARG00000035400, ENSDARG00000116462 222.12 1665.12 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
66. sepp1a 220.80 1655.23 selenoprotein P, plasma, 1a
67. tfa ENSDARG00000016771 216.82 1625.39 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
68. rps26l ENSDARG00000030408 216.16 1620.44 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
69. he1b 214.83 1610.47 hatching enzyme 1b
70. zgc:92533 zgc:92533 213.50 1600.50
71. cyt1l ENSDARG00000036832 210.19 1575.69 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
72. rpl21 ENSDARG00000010516, ENSDARG00000110263 204.22 1530.93 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
73. AL935210.1 ENSDARG00000088330 200.24 1501.10 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
74. rps14 ENSDARG00000036629 197.59 1481.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
75. fabp3 ENSDARG00000023290 190.96 1431.53 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
76. rplp1 ENSDARG00000021864 186.98 1401.69 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
77. si:dkey-239j18.3 ENSDARG00000089806 186.98 1401.69 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
78. AC024175.17 AC024175.17 186.32 1396.75
79. pabpc1a ENSDARG00000017219 184.99 1386.78 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
80. pvalb9 ENSDARG00000071601, ENSDARG00000113946 183.67 1376.88 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
81. myhz1.3 ENSDARG00000067997 182.34 1366.91 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
82. APOB APOB 181.68 1361.96
83. mt-co1 ENSDARG00000063905 181.01 1356.94 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
84. eif5a ENSDARG00000017235 179.69 1347.04 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
85. acta1b ENSDARG00000055618 179.02 1342.02 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
86. rpl36a ENSDARG00000058105, ENSDARG00000112656 178.36 1337.07 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
87. psap ENSDARG00000013968 175.71 1317.21 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
88. rpl11 ENSDARG00000043509 175.05 1312.26 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. rps27a ENSDARG00000032725, ENSDARG00000114059 174.38 1307.24 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
90. myl10 ENSDARG00000062592 173.06 1297.34 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
91. rpl26 ENSDARG00000102317 171.07 1282.42 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
92. rps15 ENSDARG00000070849, ENSDARG00000110979 169.08 1267.51 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
93. rpl19 ENSDARG00000013307 168.42 1262.56 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
94. acta1a ENSDARG00000036371 166.43 1247.64 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
95. apoc2 ENSDARG00000092155 166.43 1247.64 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
96. zgc:174153 ENSDARG00000079376 165.10 1237.67 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
97. rps20 ENSDARG00000036044 164.44 1232.72 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
98. rbp4 ENSDARG00000101199 161.12 1207.83 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
99. paics ENSDARG00000033539 159.13 1192.92 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
100. si:dkeyp-86f7.3 si:dkeyp-86f7.3 156.48 1173.05
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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