Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s22.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24624.84 184576.54
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3659.96 27433.39 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 2148.59 16104.85 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. tmsb4x ENSDARG00000077777 1793.67 13444.53 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. apoa2 ENSDARG00000015866 1754.64 13151.98 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. apoc1l apoc1l 1534.06 11498.61
7. apobb apobb 1465.07 10981.49
8. zgc:161979 zgc:161979 1436.93 10770.57
9. mt-co2 ENSDARG00000063908 1377.93 10328.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. zgc:161979_1 zgc:161979_1 1338.90 10035.78
11. mt-nd2 ENSDARG00000063899 1110.15 8321.18 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. tpma ENSDARG00000033683 1011.21 7579.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
13. apoa1a ENSDARG00000012076, ENSDARG00000110395 972.18 7287.02 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
14. mt-nd4 ENSDARG00000063917 952.21 7137.33 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. mt-atp6 ENSDARG00000063911 930.42 6974.00 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. apoeb ENSDARG00000040295 891.39 6681.45 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
17. mt-co3 ENSDARG00000063912 699.86 5245.83 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. ckmb ENSDARG00000040565 688.06 5157.38 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
19. hbbe3 ENSDARG00000038147, ENSDARG00000109344 662.64 4966.85 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
20. actb2 ENSDARG00000037870 625.42 4687.86 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. si:dkey-151g10.6 si:dkey-151g10.6 613.62 4599.41
22. bhmt ENSDARG00000013430 609.09 4565.46 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
23. apoa4 apoa4 531.93 3987.10
24. eef1a1l1 ENSDARG00000020850 515.59 3864.63 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. mt-nd1 ENSDARG00000063895 505.60 3789.75 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. hbae3 ENSDARG00000079305 498.34 3735.33 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
27. si:dkey-150i13.2 ENSDARG00000071052 472.02 3538.05 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
28. zgc:112425 zgc:112425 464.76 3483.63
29. ckma ENSDARG00000035327, ENSDARG00000114671 456.59 3422.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
30. mt-cyb ENSDARG00000063924 451.14 3381.54 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. atp2a1 ENSDARG00000020574 425.72 3191.00 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
32. fabp2 ENSDARG00000006427, ENSDARG00000110230 412.11 3088.99 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
33. hbbe1.1 ENSDARG00000113599 412.11 3088.99 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
34. mylz3 ENSDARG00000017441 364.91 2735.20 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
35. wu:fa26c03 364.00 2728.38 wu:fa26c03
36. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 356.74 2673.96 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
37. ppiaa ENSDARG00000009212 346.75 2599.08 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
38. zgc:153129 zgc:153129 334.95 2510.63
39. actc1b ENSDARG00000099197 334.04 2503.81 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 327.69 2456.21 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 319.52 2394.98 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. tnnc2 ENSDARG00000070835, ENSDARG00000111155 309.54 2320.17 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
43. he1a 307.72 2306.53 hatching enzyme 1a, transcript variant X1
44. actb1 ENSDARG00000037746, ENSDARG00000113649 305.90 2292.89 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. zgc:174855 ENSDARG00000094559 305.90 2292.89 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
46. pvalb2 ENSDARG00000002768, ENSDARG00000114085 304.09 2279.32 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
47. hmga1a ENSDARG00000028335 290.47 2177.23 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
48. rpl18a ENSDARG00000025073 285.03 2136.45 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. tfa ENSDARG00000016771 275.04 2061.57 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 269.60 2020.80 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. rpl36 ENSDARG00000100588 269.60 2020.80 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
52. sepp1a 267.78 2007.16 selenoprotein P, plasma, 1a
53. ttna ttna 267.78 2007.16
54. rpl23 ENSDARG00000053457 266.87 2000.34 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
55. rps23 ENSDARG00000021838 264.15 1979.95 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. hspa8 ENSDARG00000068992, ENSDARG00000114726 260.52 1952.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
57. rps26l ENSDARG00000030408 259.61 1945.92 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
58. ctslb ENSDARG00000039173, ENSDARG00000074306 258.70 1939.10 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
59. CABZ01044814.2 CABZ01044814.2 250.53 1877.86
60. rpl8 ENSDARG00000014867 248.72 1864.29 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. APOB APOB 245.99 1843.83
62. gatm ENSDARG00000036239 243.27 1823.44 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
63. hbae1_1 237.82 1782.59 hemoglobin, alpha embryonic 1
64. btf3 ENSDARG00000035400, ENSDARG00000116462 234.19 1755.38 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
65. ttnb ttnb 226.02 1694.14
66. rpl19 ENSDARG00000013307 225.12 1687.40 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. psap ENSDARG00000013968 223.30 1673.75 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
68. ctsla ENSDARG00000007836 220.58 1653.37 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
69. rbp4 ENSDARG00000101199 218.76 1639.72 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
70. rps14 ENSDARG00000036629 214.22 1605.70 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
71. zgc:92533 zgc:92533 213.32 1598.95
72. cyt1l ENSDARG00000036832 209.69 1571.74 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
73. rps15 ENSDARG00000070849, ENSDARG00000110979 208.78 1564.92 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
74. rpl9 ENSDARG00000037350, ENSDARG00000112384 207.87 1558.10 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
75. rps27a ENSDARG00000032725, ENSDARG00000114059 206.05 1544.46 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
76. myhz1.3 ENSDARG00000067997 203.33 1524.07 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
77. rpl26 ENSDARG00000102317 202.42 1517.25 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
78. pvalb9 ENSDARG00000071601, ENSDARG00000113946 200.61 1503.68 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
79. mt-co1 ENSDARG00000063905 198.79 1490.04 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
80. eif5a ENSDARG00000017235 192.44 1442.44 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
81. wu:fb37b09 wu:fb37b09 190.62 1428.80
82. prdx5 ENSDARG00000055064 188.81 1415.23 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
83. rplp1 ENSDARG00000021864 186.99 1401.59 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
84. rpl11 ENSDARG00000043509 185.18 1388.02 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
85. fetub ENSDARG00000053973 184.27 1381.20 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
86. pabpc1a ENSDARG00000017219 184.27 1381.20 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
87. apoc2 ENSDARG00000092155 181.55 1360.82 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
88. gamt ENSDARG00000070844, ENSDARG00000109945 180.64 1353.99 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
89. acta1a ENSDARG00000036371 177.01 1326.79 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
90. pcna ENSDARG00000054155 173.38 1299.58 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
91. rpl36a ENSDARG00000058105, ENSDARG00000112656 173.38 1299.58 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
92. paics ENSDARG00000033539 172.47 1292.76 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
93. rpl35 ENSDARG00000018334 170.65 1279.11 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
94. si:dkey-269i1.3 167.02 1251.91 si:dkey-269i1.3
95. rps20 ENSDARG00000036044 166.11 1245.08 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
96. he1b 165.21 1238.34 hatching enzyme 1b
97. rps2 ENSDARG00000077291 163.39 1224.70 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
98. hbbe1.1_1 ENSDARG00000113599 159.76 1197.49 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
99. rpl6 ENSDARG00000058451 159.76 1197.49 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
100. rpl18 ENSDARG00000029533 158.85 1190.67 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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