Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s16.

Sample reads: 133,405. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27535.17 206404.24
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1395.62 10461.60 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1180.95 8852.43
4. mt-co2 ENSDARG00000063908 1112.30 8337.83 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd2 ENSDARG00000063899 1047.59 7852.76 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. tmsb4x ENSDARG00000077777 1016.55 7620.08 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. mt-atp6 ENSDARG00000063911 905.49 6787.57 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. hmga1a ENSDARG00000028335 846.91 6348.46 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. pcna ENSDARG00000054155 715.30 5361.90 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
10. eef1a1l1 ENSDARG00000020850 668.52 5011.24 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. actb2 ENSDARG00000037870 661.09 4955.55 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. si:dkey-151g10.6 si:dkey-151g10.6 628.29 4709.68
13. eef2b ENSDARG00000100371, ENSDARG00000109247 583.70 4375.43 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
14. mt-nd4 ENSDARG00000063917 578.89 4339.37 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. ppiaa ENSDARG00000009212 557.03 4175.51 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
16. AL954137.2 ENSDARG00000114408 504.12 3778.89
17. mt-co3 ENSDARG00000063912 499.75 3746.14 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. mt-nd1 ENSDARG00000063895 495.38 3713.38 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 494.07 3703.56 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. ptmab ENSDARG00000101766 484.45 3631.45 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
21. apoa1b ENSDARG00000101324 459.09 3441.35 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. hsp90ab1 ENSDARG00000029150 403.12 3021.80 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
23. rpl10a ENSDARG00000042905, ENSDARG00000115649 399.62 2995.56 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
24. mt-cyb ENSDARG00000063924 385.20 2887.47 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. rpl23 ENSDARG00000053457 319.61 2395.80 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. he1a 316.99 2376.16 hatching enzyme 1a, transcript variant X1
27. rpl18a ENSDARG00000025073 315.68 2366.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
28. rps23 ENSDARG00000021838 304.75 2284.41 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
29. rpl21 ENSDARG00000010516, ENSDARG00000110263 301.25 2258.18 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
30. apoa2 ENSDARG00000015866 298.63 2238.54 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
31. rpl8 ENSDARG00000014867 289.44 2169.65 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
32. rps26l ENSDARG00000030408 289.01 2166.43 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
33. apoc1l apoc1l 287.26 2153.31
34. rps14 ENSDARG00000036629 282.45 2117.25 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 275.45 2064.78 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. tpma ENSDARG00000033683 275.01 2061.48 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
37. apobb apobb 272.83 2045.14
38. pabpc1a ENSDARG00000017219 271.95 2038.54 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
39. rpl26 ENSDARG00000102317 271.08 2032.02 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. ctslb ENSDARG00000039173, ENSDARG00000074306 269.33 2018.90 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
41. zgc:161979 zgc:161979 268.46 2012.38
42. btf3 ENSDARG00000035400, ENSDARG00000116462 264.96 1986.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. actb1 ENSDARG00000037746, ENSDARG00000113649 258.40 1936.97 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 258.40 1936.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. zgc:123194 zgc:123194 257.09 1927.15
46. cirbp cirbp 252.72 1894.39
47. ran ENSDARG00000057026 249.22 1868.16 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
48. rpl11 ENSDARG00000043509 249.22 1868.16 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. id1 ENSDARG00000040764 247.03 1851.74 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
50. wu:fa26c03 247.03 1851.74 wu:fa26c03
51. zgc:161979_1 zgc:161979_1 246.16 1845.22
52. hmgn2 ENSDARG00000099572 240.91 1805.87 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
53. si:dkeyp-86f7.3 si:dkeyp-86f7.3 238.29 1786.23
54. rps27a ENSDARG00000032725, ENSDARG00000114059 237.41 1779.63 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. rps2 ENSDARG00000077291 236.98 1776.41 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
56. rplp1 ENSDARG00000021864 236.54 1773.11 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. rps15a ENSDARG00000010160 236.10 1769.81 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
58. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 232.17 1740.35 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
59. zgc:174855 ENSDARG00000094559 226.48 1697.70 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
60. eif5a ENSDARG00000017235 225.61 1691.18 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. mt-co1 ENSDARG00000063905 222.55 1668.24 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
62. h3f3a 221.24 1658.42 H3 histone, family 3A, transcript variant X1
63. rpl36 ENSDARG00000100588 219.05 1642.00 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. cfl1 ENSDARG00000021124 216.86 1625.59 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
65. rpl6 ENSDARG00000058451 215.55 1615.77 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
66. khdrbs1a ENSDARG00000052856 214.24 1605.95 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
67. rps15 ENSDARG00000070849, ENSDARG00000110979 212.93 1596.13 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
68. ccnd1 ENSDARG00000101637 207.25 1553.55 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
69. CABZ01044814.2 CABZ01044814.2 202.87 1520.72
70. top1l ENSDARG00000070545 195.44 1465.02 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
71. ckmb ENSDARG00000040565 194.13 1455.20 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
72. rpl19 ENSDARG00000013307 193.25 1448.61 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. rpl7 ENSDARG00000007320 192.38 1442.08 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
74. seta ENSDARG00000031495 192.38 1442.08 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
75. rpl5b ENSDARG00000015862, ENSDARG00000109661 191.50 1435.49 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
76. si:dkey-150i13.2 ENSDARG00000071052 191.50 1435.49 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
77. hbbe3 ENSDARG00000038147, ENSDARG00000109344 190.63 1428.97 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
78. rpl27 ENSDARG00000015128 188.44 1412.55 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
79. rpl35 ENSDARG00000018334 188.44 1412.55 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
80. rps6 ENSDARG00000019778 186.26 1396.21 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
81. rps20 ENSDARG00000036044 184.07 1379.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
82. rpl18 ENSDARG00000029533 180.14 1350.33 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
83. hnrnpab hnrnpab 178.39 1337.22
84. rps27.1 ENSDARG00000023298 177.51 1330.62 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
85. rps4x ENSDARG00000014690 175.76 1317.50 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. AC024175.17 AC024175.17 174.02 1304.46
87. fabp3 ENSDARG00000023290 173.14 1297.86 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
88. RPL29 ENSDARG00000077717 171.83 1288.04 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
89. rplp0 ENSDARG00000051783 167.46 1255.28 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. faua ENSDARG00000099022 164.83 1235.57 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
91. si:ch1073-429i10.3 163.96 1229.05 si:ch1073-429i10.3, transcript variant X2
92. wu:fb37b09 wu:fb37b09 163.09 1222.53
93. apoa1a ENSDARG00000012076, ENSDARG00000110395 161.34 1209.41 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
94. ppiab ENSDARG00000103994 156.53 1173.35 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
95. rpsa ENSDARG00000019181 156.09 1170.05 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. he1b 154.34 1156.94 hatching enzyme 1b
97. rpl39 ENSDARG00000036316, ENSDARG00000117167 153.90 1153.64 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 153.90 1153.64 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. rps9 ENSDARG00000011405, ENSDARG00000113248 150.41 1127.48 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
100. pbx4 ENSDARG00000052150 149.97 1124.18 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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